Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTCGACCACAGTGTAGCTTCACAGATGGCACAGCAGAAGGAGTTCAATCTCAAAAACCCTTCTGCTTACCATTATGACCTGTTCTTGCTCGGAGTTATGgtattttctgacttcttattttgttatttatgtttctgacatattctatctagattttcatgcttctttcacttggctatttcag

Basic information

species Vitis vinifera
transcript Vv04s0008g04980.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0008g04980.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: LOC_Os05g08430.1 (Oryza sativa), 5'ss of exon 7
TTTCGACCACAGTGTAGCTTCACAGATGGCACAGCAGAAGGAGTTCAATCTCAAAAACCCTTCTGCTTACCATTATGACCTGTTCTTGCTCGGAGTTATGgtattttctgacttcttattttgttatttatgtttctgacatattctatctagattttcatgcttctttcacttggctatttcag------------------
 || || || ||||||||||||||  |||| |||||||||||||| ||| | |||||||| || ||||||||||||||| | ||  | ||| |  |||||||||  | || | | |    | |||   | |||  |  |||| ||||   |      | | | | |  ||  |||  |  | | |                  
CTTTGATCATAGTGTAGCTTCACAACTGGCTCAGCAGAAGGAGTTTAATTTGAAAAACCCATCGGCTTACCATTATGACATTTTGGTCCTCAGCTTTATGgtatgatttgccatttg---tagttgcctctgtagcatacattttcttattttgcagtaaggatgcaatcctttgattcctactgcttatgggaacacaaaaa

upper sequence: Vv04s0008g04980.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT5G25430.1 (Arabidopsis thaliana), 5'ss of exon 7
TTTCGACCACAGTGTAGCTTCACAGATGGCACAGCAGAAGGAGTTCAATCTCAAAAACCCTTCTGCTTACCATTATGACCTGTTCTTGCTCGGAGTTATGgtattttctgacttcttattttgttatttatgtttctgacatattctatctagattttcatgcttctttcacttggctatttcag-------------
 |||||||| |||||||||||||| |||||||| ||||| ||||| ||||| || || ||||||||||| || |||||| | |||||||| ||| |||| ||   |||| |  | ||   ||   | |||| |    || |  || | ||  |   |  || |   ||  |  | | | ||   |             
CTTCGACCATAGTGTAGCTTCACAAATGGCACAACAGAAAGAGTTTAATCTAAAGAATCCTTCTGCTTATCACTATGACATCTTCTTGCTTGGAATTATTgttagttcttaaatgtt--cttaaaacttatttcaaagatac-ttatttcatggcataaataccaattaaatcttgttgttatggtggtgatctatag

upper sequence: Vv04s0008g04980.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT4G32510.1 (Arabidopsis thaliana), 5'ss of exon 7
TTTCGACCACAGTGTAGCTTCACAGATGGCACAGCAGAAGGAGTTCAATCTCAAAAACCCTTCTGCTTACCATTATGACCTGTTCTTGCTCGGAGTTATGgtatt-ttctgacttcttattttgttatttatgtttctgacatattctatctagat---tttcatgct--tctttcacttggctatttcag
 || || ||| ||||| || |||| ||||| ||||| |||||||||||||||||||| ||  | ||||| || |||||  | ||  |  | ||| | |||||||  || |||       ||  |   | | | ||  | |  |  |  || |  ||   |   || ||  |   |  ||      ||  ||
CTTTGATCACTGTGTATCTGCACAAATGGCTCAGCAAAAGGAGTTCAATCTCAAAAATCCGACGGCTTATCACTATGATATCTTTATTTTAGGAATCATGgtatggttatgatgatggcttgcgacttctgtattctttagctgctgcatttgtatgaatcaaatactaattcatttctaaatggttgtag