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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGTGCATGATTTATGCTTAATCCATACTGACCTGAAGCCAGAAAATATACTTCTTGTATCATCTGAGTGTATAAAGCTTCCTAGCTCCAAGgtatttggccttttacaattggaaaatcattccattttggatttgggtatagatgcatttataatatttaaataaatgcttggaatggtacag

Basic information

species Vitis vinifera
transcript Vv04s0008g04220.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0008g04220.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G366935_T09 (Zea mays), 5'ss of exon 6
ATGTGCATGATTTATGCTTAATCCATACTGACCTGAAGCCAGAAAATATACTTCTTGTATCATCTGAGTGTATAAAGCTTCCTAGCTCCAAGgtatttggccttttacaattggaa-aatcatt--ccattttggatttgggtatagatgcatttataatatt--taaataaatgcttggaatggtacag
|| ||||||| ||  |  | ||||| ||||| |||||||||||||| ||||| ||||| || ||||||| ||||||  |||| ||  | ||||||  |   |||   || ||  |   || ||   | |  |      | || ||||| | ||||  | | ||  | ||| | |||||||  | ||||||
ATATGCATGACTTGAGGCTTATCCACACTGATCTGAAGCCAGAAAACATACTACTTGTGTCTTCTGAGTATATAAAAGTTCCAAGTACAAAGgtacctattcttacccatttttagtgattatctgctaaatctttactaggcataga-gtatttgcagttttcttgaatgattgcttggggttgtacag

upper sequence: Vv04s0008g04220.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G094039_T06 (Zea mays), 5'ss of exon 6
ATGTGCATGATTTATGCTTAATCCATACTGACCTGAAGCCAGAAAATATACTTCTTGTATCATCTGAGTGTATAAAGCTTCCTAGCTCCAAGgtatttggccttttacaattggaaaatcatt-----ccattttggatttgggtatagatgcatttataatat--ttaaataaatgcttggaatggtacag-
|| ||||||| ||  |  | ||||| ||||| |||||||||||||| ||||| ||||| || ||||||| ||||||  |||| ||  | |||||   |   ||    || |     | | |||     | ||||      | || ||| | | ||||  | | |  || ||| | |||||||  | |||||| 
ATATGCATGAGTTGCGGCTTATCCACACTGATCTGAAGCCAGAAAACATACTACTTGTCTCTTCTGAGTATATAAAAGTTCCAAGTACAAAGgtgcctattctcacccactcttttagtgattgtctgctatttctttactaggaataca-gtatttgcagttttcttgaatgattgcttggggttgtacaga

upper sequence: Vv04s0008g04220.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G366935_T05 (Zea mays), 5'ss of exon 7
ATGTGCATGATTTATGCTTAATCCATACTGACCTGAAGCCAGAAAATATACTTCTTGTATCATCTGAGTGTATAAAGCTTCCTAGCTCCAAGgtatttggccttttacaattggaa-aatcatt--ccattttggatttgggtatagatgcatttataatatt--taaataaatgcttggaatggtacag---
|| ||||||| ||  |  | ||||| ||||| |||||||||||||| ||||| ||||| || ||||||| ||||||  |||| ||  | ||||||  |   |||   || ||  |   || ||   | |  |      | || ||||| | ||||  | | ||  | ||| | |||||||  | ||||||   
ATATGCATGACTTGAGGCTTATCCACACTGATCTGAAGCCAGAAAACATACTACTTGTGTCTTCTGAGTATATAAAAGTTCCAAGTACAAAGgtacctattcttacccatttttagtgattatctgctaaatctttactaggcataga-gtatttgcagttttcttgaatgattgcttggggttgtacagaag

upper sequence: Vv04s0008g04220.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G094039_T01 (Zea mays), 5'ss of exon 5
ATGTGCATGATTTATGCTTAATCCATACTGACCTGAAGCCAGAAAATATACTTCTTGTATCATCTGAGTGTATAAAGCTTCCTAGCTCCAAGgtatttggccttttacaattggaaaatcatt-----ccattttggatttgggtatagatgcatttataatatt--taaataaatgcttggaatggtacag
|| ||||||| ||  |  | ||||| ||||| |||||||||||||| ||||| ||||| || ||||||| ||||||  |||| ||  | |||||   |   ||    || |     | | |||     | ||||      | || ||| | | ||||  | | ||  | ||| | |||||||  | ||||||
ATATGCATGAGTTGCGGCTTATCCACACTGATCTGAAGCCAGAAAACATACTACTTGTCTCTTCTGAGTATATAAAAGTTCCAAGTACAAAGgtgcctattctcacccactcttttagtgattgtctgctatttctttactaggaataca-gtatttgcagttttcttgaatgattgcttggggttgtacag

upper sequence: Vv04s0008g04220.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA06G08480.2 (Glycine max), 5'ss of exon 6
ATGTGCATGATTTATGCTTAATCCATACTGACCTGAAGCCAGAAAATATACTTCTTGTATCATCTGAGTGTATAAAGCTTCCTAGCTCCAAGgtatttggccttttacaattggaaaatcattccattt-tggatttgggtatagatgcatttataatatttaaataaatgcttggaatggtacag
|| |||||||  || || ||||||| |||||||| ||||||||||||||||||||||| || ||||| | | ||||||| |||||||  |||||||||    ||||   ||   || || ||    ||| | || |  | |||| ||  |||||        |    |||  ||||| ||||||||
ATATGCATGAACTACGCCTAATCCACACTGACCTAAAGCCAGAAAATATACTTCTTGTTTCCTCTGAATATGTAAAGCTCCCTAGCTATAAGgtatttattatttttggatccaaacataataatgtttgtagactcagttata-atatattta--------agggtaattattggattggtacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110378511|gb|EC943648.1|EC943648
EST:     AAAATATACTTCTTGTATCATCTGAGTGTATAAAGCTTCCTAGCTCCAAG                         AGGTTTTCTTCCGATGAAACTCACTTCAGGTGCTTGCCAAAGTCGAGTGCA
genomic: AAAATATACTTCTTGTATCATCTGAGTGTATAAAGCTTCCTAGCTCCAAGgtatttggcc ... aatggtacagAGGTTTTCTTCCGATGAAACTCACTTCAGGTGCTTGCCAAAGTCGAGTGCA