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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAACCCCACTGGTGTCGACCCAACCCTTCAGCAATGGGAGCAGATAAGGCAGTTGATAAGATTGAAAGGGTTGTTACCTTTCTTTGACAGTGCTTACCAGgtagatccaaattcaatttgagtttctcaatccagtaggaagatgatgactattctttgttcaacatcattccatcatattgaattaagcagatgcattcttgtcattctag

Basic information

species Vitis vinifera
transcript Vv04s0008g03770.t01
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110399226|gb|EC965723.1|EC965723
EST:     AGTTGATAAGATTGAAAGGGTTGTTACCTTTCTTTGACAGTGCTTACCAG                         GGTTTTGCAAGTGGGAGTCTGGATGCAGATGCGCAGTCTGTTCGCATGTTT
genomic: AGTTGATAAGATTGAAAGGGTTGTTACCTTTCTTTGACAGTGCTTACCAGgtagatccaa ... gtcattctagGGTTTTGCAAGTGGGAGTCTGGATGCAGATGCGCAGTCTGTTCGCATGTTT
EST: gi|110404843|gb|EC970367.1|EC970367
EST:     AGTTGATAAGATTGAAAGGGTTGTTACCTTTCTTTGACAGTGCTTACCAG                         GGTTTTGCAAGTGGGAGTCTGGATGCAGATGCGCAGTCTGTTCGCATGTTT
genomic: AGTTGATAAGATTGAAAGGGTTGTTACCTTTCTTTGACAGTGCTTACCAGgtagatccaa ... gtcattctagGGTTTTGCAAGTGGGAGTCTGGATGCAGATGCGCAGTCTGTTCGCATGTTT
EST: gi|161716869|gb|FC068115.1|FC068115
EST:     AGTTGATAAGATCGAAAGGGTTGTTACCTTTCTTTGACAGTGCTTACCAG                         GGTTTTGCAAGTGGGAGTCTGGATGCAGATGCACAGTCTGTTCGCATGTTT
genomic: AGTTGATAAGATTGAAAGGGTTGTTACCTTTCTTTGACAGTGCTTACCAGgtagatccaa ... gtcattctagGGTTTTGCAAGTGGGAGTCTGGATGCAGATGCGCAGTCTGTTCGCATGTTT
EST: gi|110698493|gb|EE076055.1|EE076055
EST:     GTTGATAAGAATTGAA-GGGTTGTTACCTTTCTTTGACAGTGCTTACCAG                         GGTTTTGCAAGTGGGAGTCTGGATGCAGATGCGCAGTCTGTTCGCATGTTT
genomic: GTTGATAAGA-TTGAAAGGGTTGTTACCTTTCTTTGACAGTGCTTACCAGgtagatccaa ... gtcattctagGGTTTTGCAAGTGGGAGTCTGGATGCAGATGCGCAGTCTGTTCGCATGTTT
EST: gi|110368860|gb|EC932986.1|EC932986
EST:     AGTTGATAAGATTGAAAGGGTTGTTACCTTTCTTTGACAGTGCTTACCAG                         GGTTTTGCAAGTGGGAGTCTGGATGCAGATGCGCAGTCTGTTCGCATGTTT
genomic: AGTTGATAAGATTGAAAGGGTTGTTACCTTTCTTTGACAGTGCTTACCAGgtagatccaa ... gtcattctagGGTTTTGCAAGTGGGAGTCTGGATGCAGATGCGCAGTCTGTTCGCATGTTT
EST: gi|110711178|gb|EE087421.1|EE087421
EST:     GTTGATAAGATTGAAAGGGTTGTTACCTTTCTTTGACAGTGCTTAACAAG                         GGTTT-GCAAGT
genomic: GTTGATAAGATTGAAAGGGTTGTTACCTTTCTTTGACAGTGCTTACCA-Ggtagatccaa ... gtcattctagGGTTTTGCAAGT
EST: gi|110372200|gb|EC936351.1|EC936351
EST:     AGTTGATAAGATCGAAAGGGTTGTTACCTTTCTTTGACAGTGCTTACCAG                         GGTTTTGCAAGTGGGAGTCTGGATGCAGATGCACAGTCTGTTCGCATGTTT
genomic: AGTTGATAAGATTGAAAGGGTTGTTACCTTTCTTTGACAGTGCTTACCAGgtagatccaa ... gtcattctagGGTTTTGCAAGTGGGAGTCTGGATGCAGATGCGCAGTCTGTTCGCATGTTT
EST: gi|33402572|gb|CF208199.1|CF208199
EST:     AGTTGATAAGATCGAAAGGGTTGTTACCTTTCTTTGACAGTGCTTACCAG                         GGTTTTGCAAGTGGGAGTCTGGATGCAGATGCACAGTCTGTTCGCATGTTT
genomic: AGTTGATAAGATTGAAAGGGTTGTTACCTTTCTTTGACAGTGCTTACCAGgtagatccaa ... gtcattctagGGTTTTGCAAGTGGGAGTCTGGATGCAGATGCGCAGTCTGTTCGCATGTTT