Sequence
atgc intronic sequence ATGC exonic sequenceTGGTTCTCCATGAAGCGGCAGCATGCTATAATAGTTATGGCAGACAGTCTCTACTACACTAAATTCAAGCTTTACTGCAGGgtagctctctccaactataatttgttttttgtttcctaattggcagtacttatagatggaaaatataatctactgtgtaatctttcatccgggcatttgt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0008g02630.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G149969_T01 (Zea mays), 5'ss of exon 7
TGGTTCTCCATGAAGCGGCAGCATGCTATAATAGTTATGGCAGACAGTCTCTACTACACTAAATTCAAGCTTTACTGCAGGgtagctctctccaactataatttgttttttgtttcctaattggcagtacttatagatggaaaatataatctactgtgtaatctttcatccgggcatttgt-
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TGGTTCTCAATGAAGCGACAACATGCAATGGTGGTGATTGCAGACAGTCTTTATTACTCAAAATTCAGGCTTTACTGCAGGgtaatcaaatctaaactttcatggccttccgcccatatactgtatactgtagtactagcaaattacaattc-tggtgtcgtgttgtagtcaaagattacac
upper sequence: Vv04s0008g02630.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA17G29670.1 (Glycine max), 5'ss of exon 7
TGGTTCTCCATGAAGCGGCAGCATGCTATAATAGTTATGGCAGACAGTCTCTACTACACTAAATTCAAGCTTTACTGCAGGgtagc-tctctccaactataatttgttt-tttgtttcctaattggcagtacttatagatggaaaatataatc--tactgtgtaatctttcatccgggcatttgt
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TGGTTCTCAATGAAACGGCAGCATGCTATAATAGTTATGGCAGATAGTCTCTATTTTACAAAATTCAAGCACCATTGCAGGgtactatgttgttaggaaccacttgtttatttgtttgctaactggatggattgtttgattggtattattcctatgatcctatcatctttgttaagaatgc----
upper sequence: Vv04s0008g02630.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA14G17110.1 (Glycine max), 5'ss of exon 7
TGGTTCTCCATGAAGCGGCAGCATGCTATAATAGTTATGGCAGACAGTCTCTACTACACTAAATTCAAGCTTTACTGCAGGgtagc-tctctccaactataatttgttt-tttgtttcctaattggcagtacttatagatggaaaatataatctactgtgtaatctttcatccgggcatttgt
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TGGTTCTCAATGAAACGGCAGCATGCTATTATAGTTATGGCAGATAGTCTCTATTTTACAAAATTCAAGCACCATTGCAGGgtactatgttgttaagaaccacttgtttatttgtatgctgactggatgaattgtttgattggtattatt-cctatgatcttatcatctttgttaagaatgg-
upper sequence: Vv04s0008g02630.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT4G31350.2 (Arabidopsis thaliana), 5'ss of exon 7
TGGTTCTCCATGAAGCGGCAGCATGCTATAATAGTTATGGCAGACAGTCTCTACTACACTAAATTCAAGCTTTACTGCAGGgtagctct-ctccaactataatttgttttttgtttcctaattggcagtacttatagatgg--aaaatataatctactgtgtaatctttcatccgggcatttgt
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TGGTTTTCAATGAAGAGGAGACATGCTATAGTCGTCATGGCGGACAGCCTTTACTACACAAAATTCAAGCTTTACTGTAGGgtaagtaagccttaaatttcatgtgttctc-atattcacatgatatttgtttataaccagccagaccatatcttgtcgtatgtcctaatattctatctcgt--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30303469|gb|CB980263.1|CB980263EST: TAGTTATGGCAGACAGTCTCTACTACACTAAATTCAAGCTTTACTGCAGG CCAGGTATGGATGGGCGGAATTGCTATGCAGATGAACATTACTTGCCAACC
genomic: TAGTTATGGCAGACAGTCTCTACTACACTAAATTCAAGCTTTACTGCAGGgtagctctct ... aatttcacagCCAGGTATGGATGGGCGGAATTGCTATGCAGATGAACATTACTTGCCAACC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGGTTCTCCATGAAGCGGCAGCATGCTATAATAGTTATGGCAGACAGTCTCTACTACACTAAATTCAAGCTTTACTGCAGGgtagctctctccaactataatttgttttttgtttcctaattggcagtacttatagatggaaaatataatctactgtgtaatctttcatccgggcatttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaata