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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGTTGCTGTGAAGAAGTTCCTAGCCCAAGATTTCTCTGGTGATGCATTGGTTCAGTTTAGATACGAGgtaagtgcctgaaatttacatcttacattataatattaatcaaaatggtcaattcagttggctttataaacattcaaattaataccttctggttgcttcatacag

Basic information

species Vitis vinifera
transcript Vv04s0008g01310.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0008g01310.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA17G34730.1 (Glycine max), 5'ss of exon 7
GAGGTTGCTGTGAAGAAGTTCCTAGCCCAAGATTTCTCTGGTGATGCATTGGTTCAGTTTAGATACGAGgtaagtgcctgaaatttacatcttacattataatattaatcaaaatggtcaattcagttggctttataaacattcaaattaataccttctggttgcttcatacag
|| |||||||| |||||||| || | |||||||||||||||||||||| | | ||| || | || ||| |||||    ||   | || ||   ||||     |||     ||    ||||           | |  | | ||  | ||| || ||   |  ||||||  | |||
GAAGTTGCTGTAAAGAAGTTTCTGGACCAAGATTTCTCTGGTGATGCACTAGCTCAATTCAAATCCGAAgtaagctattgtc-tctatatgc-acat----gtat-----aaggcagtca-----------tatgcagatata-atattcatgcccatttattgctttttgcag

upper sequence: Vv04s0008g01310.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA14G10790.2 (Glycine max), 5'ss of exon 8
GAGGTTGCTGTGAAGAAGTTCCTAGCCCAAGATTTCTCTGGTGATGCATTGGTTCAGTTTAGATACGAGgtaagtgcctgaaatttacatcttacattataatattaatcaaaatggtcaattcagttggctttataaacattcaa-attaataccttctggttgcttcatacag
|| |||||||| |||||||| || | |||||||||||||||||||||  | | |||||| | ||  || |||||    ||   | || ||   ||||     |||     ||    ||||             |||   |||  || ||| || ||   |  ||||||  | |||
GAAGTTGCTGTAAAGAAGTTTCTGGACCAAGATTTCTCTGGTGATGCGCTAGCTCAGTTCAAATCTGAAgtaagctattgtc-tctatatgc-acat----gtat-----aaggcagtca-------------tatgcgcatataatattcatgcccatttattgctttttgcag

upper sequence: Vv04s0008g01310.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT5G11850.1 (Arabidopsis thaliana), 5'ss of exon 7
GAGGTTGCTGTGAAGAAGTTCCTAGCCCAAGATTTCTCTGGTGATGCATTGGTTCAGTTTAGATACGAGgtaagtgcctgaaatttacatcttacattataatattaatcaaaatggtcaattcagttggctttataaacattcaaattaataccttctggttgcttcatacag
|| || ||||| |||||||| || | |||||||||||||||||||||||||   ||||| | ||  || |||| | |     ||||| | | || || ||  ||||      ||   | |  |    |  | |||   | ||||  | |  |    |||      |||  | ||
GAAGTGGCTGTTAAGAAGTTTCTGGACCAAGATTTCTCTGGTGATGCATTGACACAGTTCAAATCTGAAgtaactccaaatcattta-accatagat-atcttattttctgtaaaaattacctgcaataacgttaatcatattcggaatgtttttatcta-----ttctgatag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110685448|gb|EE062179.1|EE062179
EST:     TCCTAGCCCAAGATTTCTCTGGTGATGCATTGGTTCAGTTTAGATACGAG                         GTTGAAATCATGTTGAGATTGAGGCATCCTAATGTTGTTCTTTTTATGGGA
genomic: TCCTAGCCCAAGATTTCTCTGGTGATGCATTGGTTCAGTTTAGATACGAGgtaagtgcct ... cttcatacagGTTGAAATCATGTTGAGATTGAGGCATCCTAATGTTGTTCTTTTTATGGGA
EST: gi|34364117|gb|CF405702.1|CF405702
EST:     TCCTAGCCCAAGATTTCTCTGGTGATGCATTGGTTCAGTTTAGATACGAG                         GTTGAAATCATGTTAAGATTGAGGCATCCTAATGTTGTTCTTTTTATGGGA
genomic: TCCTAGCCCAAGATTTCTCTGGTGATGCATTGGTTCAGTTTAGATACGAGgtaagtgcct ... cttcatacagGTTGAAATCATGTTGAGATTGAGGCATCCTAATGTTGTTCTTTTTATGGGA