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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGATGAAAATGTTGGGGTTGCCCTTCTGACTTATCCTGTTCTCATGGCTTCTGATATTCTTTTATATCAGgtatacatacagttttatgtagtacaacttgctgaacatttattcttttgggattcattatttggttctgtagacatgcctatacactcaagctcatata...

Basic information

species Vitis vinifera
transcript Vv04s0008g00200.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0008g00200.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: LOC_Os01g54020.2 (Oryza sativa), 5'ss of exon 7
GGAGATGAAAATGTTGGGGTTGCCCTTCTGACTTATCCTGTTCTCATGGCTTCTGATATTCTTTTATATCAGgtatacatacagttttatgtagtacaacttgctgaacatttattcttt-tgggattcattatttggt-tctgtagacatgcctatacactcaagctcatata---------------------------------------------------
|| |||||||||||||| || || ||| |||||||||||||| | ||||||||||| |||||  | || |||||| | ||  | |  |   || ||    || |||    | ||||||   ||   |  |  |  |  | |   ||||  |   |  ||| |  | ||    ||                                                   
GGTGATGAAAATGTTGGAGTGGCACTTTTGACTTATCCTGTTTTAATGGCTTCTGACATTCTCCTGTACCAGgtaaatat-tactcgtggctattat--ttttctgggt-tgtattctcagtgatgtgtagaagctaatattaatagatgtagtttaacaattcaactttgttatggttctgtttctctcctttctatgatgccaataatagctaatgattgcag

upper sequence: Vv04s0008g00200.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G177970_T03 (Zea mays), 5'ss of exon 7
GGAGATGAAAATGTTGGGGTTGCCCTTCTGACTTATCCTGTTCTCATGGCTTCTGATATTCTTTTATATCAGgta---tacatacagttttatgtagtacaacttgctgaacattt-attcttttgggattcattatttggttctgtagacatgcctatacactcaagctcatata
|| |||||||||||||||||||| ||| |||||||||||||||| ||||||||||| |||||||| || |||||    ||   |||| |   |    || ||       ||||||| | |      | ||| |||   | ||| |    |  |   |||  ||    ||| |    
GGTGATGAAAATGTTGGGGTTGCACTTTTGACTTATCCTGTTCTAATGGCTTCTGACATTCTTTTGTACCAGgtgaattattaacagctcatttagctagaataaatgcaacatttcaattcagctgtatttattcccttgtttttctcatctcaatatgaacaatggctta----

upper sequence: Vv04s0008g00200.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G177970_T01 (Zea mays), 5'ss of exon 7
GGAGATGAAAATGTTGGGGTTGCCCTTCTGACTTATCCTGTTCTCATGGCTTCTGATATTCTTTTATATCAGgta---tacatacagttttatgtagtacaacttgctgaacattt-attcttttgggattcattatttggttctgtagacatgcctatacactcaagctcatata-----------
|| |||||||||||||||||||| ||| |||||||||||||||| ||||||||||| |||||||| || |||||    ||   |||| |   |    || ||       ||||||| | |      | ||| |||   | ||| |    |  |   |||  ||    ||| |  |            
GGTGATGAAAATGTTGGGGTTGCACTTTTGACTTATCCTGTTCTAATGGCTTCTGACATTCTTTTGTACCAGgtgaattattaacagctcatttagctagaataaatgcaacatttcaattcagctgtatttattcccttgtttttctcatctcaatatgaacaatggcttacttgaatgatcacag

upper sequence: Vv04s0008g00200.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA04G09130.2 (Glycine max), 5'ss of exon 7
GGAGATGAAAATGTTGGGGTTGCCCTTCTGACTTATCCTGTTCTCATGGCTTCTGATATTCTTTTATATCAGgt-atacatacagttttatgtagtacaacttgctgaacatttat-tcttttgggattcattatttggttctg-tagacatgcctatac-actcaagctcatata
||||||||| | ||||||||||||||| |||||||||||||||| |||||||||||||| ||| |||||||||| ||   |       ||  | ||  || ||  | |    || | | |  | |      | |       ||  |  | | ||  ||   ||| ||  | |    
GGAGATGAAGAAGTTGGGGTTGCCCTTTTGACTTATCCTGTTCTGATGGCTTCTGATATACTTCTATATCAGgtgatttttgacacactaccttgtgaaaatttataagtccttgtatgtagtagtgaaagtaaaaaaaacctaatgaataagctaatgttacttaatatga----

upper sequence: Vv04s0008g00200.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA06G09240.2 (Glycine max), 5'ss of exon 3
GGAGATGAAAATGTTGGGGTTGCCCTTCTGACTTATCCTGTTCTCATGGCTTCTGATATTCTTTTATATCAGgtatacatacagtt-ttatgtagtacaa-cttgctgaacatttat-tcttttgggattcattatttggttctgtagacatgcctatac-actcaagctcatata
||||||||| | ||||||||||||||| |||||||||||||||| |||||||||||||| ||| ||||||||||     |  |     ||| | ||  ||  ||  | |    || | | |  | |      | |          |  | | ||  ||   ||| ||  | |    
GGAGATGAAGAAGTTGGGGTTGCCCTTTTGACTTATCCTGTTCTGATGGCTTCTGATATACTTCTATATCAGgtgattttttacccactatcttgtggaaattttataagtccttgtatgtagtagtgaaagtaaaaaaacctaatgaataagctaatgttacttaatatga----