Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTGCTCAGACATAAACAAGCCAAATGGACAGTTTGTTTTACCGAGTAATCGGATGGCGGTCATGACTTTTATTTCCTCACTTCCCATACGAAAGgtatttctcttgcgcacacatctacaatggtagactttatattatgatttttgaaaaaactatgttctcgagctaagttttttttattttttatttttgtatggaaatctacatcctggttaagtaattcatgggaaattcaatttacag

Basic information

species Vitis vinifera
transcript Vv03s0091g00860.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv03s0091g00860.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA11G00410.1 (Glycine max), 5'ss of exon 7
GTTTGCTCAGACATAAACAAGCCAAATGGACAGTTTGTTTTACCGAGTAATCGGATGGCGGTCATGACTTTTATTTCCTCACTTCCCATACGAAAGgtatt------tctcttgcgcacacatctacaatggtagactttatattatgatttttgaaaa--aactatgttctcgagctaagttttttttattttttatttttgtatggaaatctacatcctggttaagtaattc---atgggaaattcaatttacag
||||| |||||||||||||||||||||||||||| |||||| || | | | || ||||| || ||||| ||| | ||||| ||||| ||  ||||||| |       | | |||   ||  || | ||    |        | |  |||||    |  |     | | | || ||  |  | |   |   | |||||| |   | ||    |  |      | ||  || |||    |||   |||   | | ||||
GTTTGTTCAGACATAAACAAGCCAAATGGACAGTATGTTTTGCCAAATGACCGTATGGCTGTTATGACCTTTGTATCCTCCCTTCCTATCAGAAAGgtgtgcttgagtttattgtatactgattt-catcaattattggggtttcctgattccaaattattggttttctcctagatgtgggctgcatgactgttttatatgcatttgtccttaaaagaggcgcttttgtgattaataatgatgaatgatactaacag

upper sequence: Vv03s0091g00860.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA01G45340.1 (Glycine max), 5'ss of exon 6
GTTTGCTCAGACATAAACAAGCCAAATGGACAGTTTGTTTTACCGAGTAATCGGATGGCGGTCATGACTTTTATTTCCTCACTTCCCATACGAAAGgtatttctct------tgcgcacacatctacaatggtagactttatattatgatttttga--aaaaactatgttctcgagctaagttttt--tttattttttatttttgtatggaaatctacatcctggttaagtaattcatgggaaattcaatttacag
||||  |||||||||||||||||||||||| ||| |||||| || | | | || ||||| || ||||| ||| | ||||| ||||| ||  ||||||| |  || |      ||   ||  || | ||    |        | || |||||    |  |     | | | || ||  |  |||       | |||| |||   | | |    ||  |  | ||  |    | | | |||   |||   ||| ||||
GTTT-TTCAGACATAAACAAGCCAAATGGAGAGTATGTTTTGCCAAATGACCGCATGGCTGTTATGACCTTTGTATCCTCCCTTCCTATCAGAAAGgtgtgcctgtgtttattgtatactgattt-catcaattattgaggttttctgattccaaattattggttttctcctagatgtgggttgccggactgttttatatgcatttttcattataaaggtgcttttgtgattaataatgatgaatgatattgacag

upper sequence: Vv03s0091g00860.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT1G49980.1 (Arabidopsis thaliana), 5'ss of exon 7
GTTTGCTCAGACATAAACAAGCCAAATGGACAGTTTGTTTTACCGAGTAATCGGATGGCGGTCATGACTTTTATTTCCTCACTTCCCATACGAAAGgtatttctcttgcgcacacatctacaatggtagactttatattatgatttttgaaaaaactatgttctcgagctaagttttttttattttttatttttgtatggaaatctacatcctggttaagtaattcatgggaaattcaatttacag
|||||||||||||| |||||||| ||||||||||||||| |||  | | | ||     | |||||||| ||  | || |  || ||  || ||||||||| | |            ||   ||| || |  |||    |   || ||| ||| |      || |         || | ||| ||||  |   ||  | |  || |||| ||    |||                            
GTTTGCTCAGACATTAACAAGCCTAATGGACAGTTTGTTCTACAAAATGACCGATCAACTGTCATGACATTCGTATCTTTCCTCCCTGTAAGAAAGgtatgtgt------------tcctgaattgttgcttttgctgtcaaatcttttaaaga------tttt---------ttctctttcttttcgaggctttaaagagaaactacctctcaattattccc-----------------------