Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGAAATTATATCTACCTAAAGTAAACCGATCAAGTGGGGCTACCATAGATATGTGGATTAAGgtctttctccctctctctcttgctcagtgtctatctattatgctctattttttatttctatgctctattttttaaaagaatttcctccatcag

Basic information

species Vitis vinifera
transcript Vv03s0091g00700.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv03s0091g00700.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT1G49970.1 (Arabidopsis thaliana), 5'ss of exon 7
CGAAATTATATCTACCTAAAGTAAACCGATCAAGTGGGGCTACCATAGATATGTGGATTAAGgtctttctccctctctctcttgctcagtgtctatctattatgctctattttttatttctatgctctattttttaaaagaatttcctccatcag
| ||||||||||| || ||||||||| |||| ||||| ||| ||||||| |||||||| |||||  | ||| |  |||      ||     ||| | || |   ||| | ||| | |  || | || || |   |||       |||||   |||
CAAAATTATATCTGCCAAAAGTAAACAGATCGAGTGGAGCTGCCATAGACATGTGGATAAAGgtggtgctcacattcttataccct-----tctgtgtaattccctcaagtttctttacctctactgtaatgaataa-------tcctctggcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26266206|gb|CA817269.1|CA817269
EST:     TACCTAAAGTAAACCGATCAAGTGGGGCTACCACAGATATGTGGATTAAG                         GCCAAAGAACTAGATGCAAACTCGGAGTATTACATTGAGCTATTAGCTAAA
genomic: TACCTAAAGTAAACCGATCAAGTGGGGCTACCATAGATATGTGGATTAAGgtctttctcc ... cctccatcagGCCAAAGAACTAGATGCAAACTCGGAGTATTACATTGAGCTATTAGCTAAA
EST: gi|110396404|gb|EC962089.1|EC962089
EST:     TACCTAAAGTAAACCGATCAAGTGGGGCTACCATAGATATGTGGATTAAG                         GCCAAAGAACTAGATGCAAACTCGGAGTATTACATTGAGCTATTAGCTAAA
genomic: TACCTAAAGTAAACCGATCAAGTGGGGCTACCATAGATATGTGGATTAAGgtctttctcc ... cctccatcagGCCAAAGAACTAGATGCAAACTCGGAGTATTACATTGAGCTATTAGCTAAA
EST: gi|27579693|gb|CB002388.1|CB002388
EST:     TACCTAAAGTAAACCGATCAAGTGGGGCTACCATAGATATGTGGATTAAG                         GCCAAAGAACTAGATGCAAACTCGGAGTATTACATTGAGCTATTAGCTAAA
genomic: TACCTAAAGTAAACCGATCAAGTGGGGCTACCATAGATATGTGGATTAAGgtctttctcc ... cctccatcagGCCAAAGAACTAGATGCAAACTCGGAGTATTACATTGAGCTATTAGCTAAA
EST: gi|26267312|gb|CA818375.1|CA818375
EST:     TACCTAAAGTAAACCGATCAAGTGGGGCTACCATAGATATGTGGATTAAG                         GCCAAAGAACTAGATGCAAACTCGGAGTATTACATTGAGCTATTAGCTAAA
genomic: TACCTAAAGTAAACCGATCAAGTGGGGCTACCATAGATATGTGGATTAAGgtctttctcc ... cctccatcagGCCAAAGAACTAGATGCAAACTCGGAGTATTACATTGAGCTATTAGCTAAA
EST: gi|30321875|gb|CD005137.1|CD005137
EST:     TACCTAAAGTAAACCGATCAAGTGGGGCTACCATAGATATGTGGATTAAG                         GCCAAAGAACTAGATGCAAACTCGGAGTATTACATTGAGCTATTAGCTAAA
genomic: TACCTAAAGTAAACCGATCAAGTGGGGCTACCATAGATATGTGGATTAAGgtctttctcc ... cctccatcagGCCAAAGAACTAGATGCAAACTCGGAGTATTACATTGAGCTATTAGCTAAA
EST: gi|28968092|gb|CB347125.1|CB347125
EST:     TACCTAAAGTAAACCGATCAAGTGGGGCTACCATAGATATGTGGATTAAG                         GCCAAAGAACTAGATGCAAACTCGGAGTACTACATTGAGCTATTAGCTAAA
genomic: TACCTAAAGTAAACCGATCAAGTGGGGCTACCATAGATATGTGGATTAAGgtctttctcc ... cctccatcagGCCAAAGAACTAGATGCAAACTCGGAGTATTACATTGAGCTATTAGCTAAA
EST: gi|110391380|gb|EC956351.1|EC956351
EST:     TACCTAAAGTAAACCGATCAAGTGGGGCTACCATAGATATGTGGATTAAG                         GCCAAAGAACTAGATGCAAACTCGGAGTATTACATTGAGCTATTAGCTAAA
genomic: TACCTAAAGTAAACCGATCAAGTGGGGCTACCATAGATATGTGGATTAAGgtctttctcc ... cctccatcagGCCAAAGAACTAGATGCAAACTCGGAGTATTACATTGAGCTATTAGCTAAA
EST: gi|26264295|gb|CA815358.1|CA815358
EST:     TACCTAAAGTAAACCGATCAAGTGGGGCTACCACAGATATGTGGATTAAG                         GCCAAAGAACTAGATGCAAACTCGGAGTATTACATTGAGCTATTAGCTAAA
genomic: TACCTAAAGTAAACCGATCAAGTGGGGCTACCATAGATATGTGGATTAAGgtctttctcc ... cctccatcagGCCAAAGAACTAGATGCAAACTCGGAGTATTACATTGAGCTATTAGCTAAA
EST: gi|30321951|gb|CD005213.1|CD005213
EST:     TACCTAAAGTAAACCGATCAAGTGGGGCTACCATAGATATGTGGATTAAG                         GCCAAAGAACTAGATGCAAACTCGGAGTATTACATTGAGCTATTAGCTAAA
genomic: TACCTAAAGTAAACCGATCAAGTGGGGCTACCATAGATATGTGGATTAAGgtctttctcc ... cctccatcagGCCAAAGAACTAGATGCAAACTCGGAGTATTACATTGAGCTATTAGCTAAA
EST: gi|110361742|gb|EC925238.1|EC925238
EST:     TACCTAAAGTAAACCGATCAAGTGGGGCTACCACAGATATGTGGATTAAG                         GCCAAAGAACTAGATGCAAACTCGGAGTATTACATTGAGCTATTAGCTAAA
genomic: TACCTAAAGTAAACCGATCAAGTGGGGCTACCATAGATATGTGGATTAAGgtctttctcc ... cctccatcagGCCAAAGAACTAGATGCAAACTCGGAGTATTACATTGAGCTATTAGCTAAA
EST: gi|22007314|gb|BQ792348.1|BQ792348
EST:     TACCTAAAGTAAACCGATCAAGTGGGGCTACCATAGATATGTGGATTAAG                         GCCAAAGAACTAGATGCAAACTCGGAGTATTCCATTGAGCTATTAGCTAAA
genomic: TACCTAAAGTAAACCGATCAAGTGGGGCTACCATAGATATGTGGATTAAGgtctttctcc ... cctccatcagGCCAAAGAACTAGATGCAAACTCGGAGTATTACATTGAGCTATTAGCTAAA
EST: gi|110685602|gb|EE062466.1|EE062466
EST:     TACCTAAAGTAAACCGATCAAGTGGGGCTACCATAGATATGTGGATTAAG                         GCCAAAGAACTAGATGCCAACTCGGAGTATTACATTGAGCTATTAGCTAAA
genomic: TACCTAAAGTAAACCGATCAAGTGGGGCTACCATAGATATGTGGATTAAGgtctttctcc ... cctccatcagGCCAAAGAACTAGATGCAAACTCGGAGTATTACATTGAGCTATTAGCTAAA
EST: gi|26264973|gb|CA816036.1|CA816036
EST:     TACCTAAAGTAAACCGATCAAGTGGGGCTACCATAGATATGTGGATTAAG                         GCCAAAGAACTAGATGCAAACTCGGAGTATTACATTGAGCTATTAGCTAAA
genomic: TACCTAAAGTAAACCGATCAAGTGGGGCTACCATAGATATGTGGATTAAGgtctttctcc ... cctccatcagGCCAAAGAACTAGATGCAAACTCGGAGTATTACATTGAGCTATTAGCTAAA
EST: gi|26258048|gb|CA809111.1|CA809111
EST:     TACCTAAAGTAAACCGATCAAGTGGGGCTACCATAGATATGTGGATTAAG                         GCCAAAGAACTAGATGCAAACTCGGAGTATTACATTGAGCTATTAGCTAAA
genomic: TACCTAAAGTAAACCGATCAAGTGGGGCTACCATAGATATGTGGATTAAGgtctttctcc ... cctccatcagGCCAAAGAACTAGATGCAAACTCGGAGTATTACATTGAGCTATTAGCTAAA
EST: gi|32245203|gb|CD711022.1|CD711022
EST:     TACCTAAAGTAAACCGATCAAGTGGGGCTACCATAGATATGTGGATTAAG                         GCCAAAGAACTAGATGCAAACTCGGAGTATTACATTGAGCTATTAGCTAAA
genomic: TACCTAAAGTAAACCGATCAAGTGGGGCTACCATAGATATGTGGATTAAGgtctttctcc ... cctccatcagGCCAAAGAACTAGATGCAAACTCGGAGTATTACATTGAGCTATTAGCTAAA
EST: gi|45770688|gb|CN006540.1|CN006540
EST:     TACCTAAAGTAAACCGATCAAGTGGGGCTACCATAGATATGTGGATTAAG                         GCCAAAGAACTAGATGCAAACTCGGAGTATTACATTGAGCTATTAGCTAAA
genomic: TACCTAAAGTAAACCGATCAAGTGGGGCTACCATAGATATGTGGATTAAGgtctttctcc ... cctccatcagGCCAAAGAACTAGATGCAAACTCGGAGTATTACATTGAGCTATTAGCTAAA
EST: gi|352764297|gb|FQ471277.1|FQ471277
EST:     TACCTAAAGTAAACCGATCAAGTGGGGCTACCATAGATATGTGGATTAAG                         GCCAAAGAACTAGATGCAAACTCGGAGTATTACATTGAGCTATTAGCTAAA
genomic: TACCTAAAGTAAACCGATCAAGTGGGGCTACCATAGATATGTGGATTAAGgtctttctcc ... cctccatcagGCCAAAGAACTAGATGCAAACTCGGAGTATTACATTGAGCTATTAGCTAAA
EST: gi|110388571|gb|EC953335.1|EC953335
EST:     TACCTAAAGTAAACCGATCAAGTGGGGCTACCATAGATATGTGGATTAAG                         GCCAAAGAACTAGATGCAAACTCGGAGTATTACATTGAGCTATTAGCTAAA
genomic: TACCTAAAGTAAACCGATCAAGTGGGGCTACCATAGATATGTGGATTAAGgtctttctcc ... cctccatcagGCCAAAGAACTAGATGCAAACTCGGAGTATTACATTGAGCTATTAGCTAAA
EST: gi|110395310|gb|EC960968.1|EC960968
EST:     TACCTAAAGTAAACCGATCAAGTGGGGCTACCATAGATATGTGGATTAAG                         GCCAAAGAACTAGATGCAAACTCGGAGTATTACATTGAGCTATTAGCTAAA
genomic: TACCTAAAGTAAACCGATCAAGTGGGGCTACCATAGATATGTGGATTAAGgtctttctcc ... cctccatcagGCCAAAGAACTAGATGCAAACTCGGAGTATTACATTGAGCTATTAGCTAAA