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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCCTAATCTTACGAAGGTTACTGCTGTTGTTGGACTCTGGGGATGGATTTGTGTTTCTCTCGCTGTATGTTCATTGATAATGCTCTATAGATGTAGTAGgtaatttcttgcttttccattcatgttagctttaacaccgtttgctttagcaaagtagctgttgctatatgagttcttattggcataatgttgttcttgt...

Basic information

species Vitis vinifera
transcript Vv03s0088g01260.t01
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351049556|gb|FQ429178.1|FQ429178
EST:     TGTGTTTCTCTCGCTGTATGTTCAGTGATAATGCTCTATAGATGTAGTAG                         TAAAGATCCGGGTTATATNNNNNNNTCTGGTGGTTTGGGTAATCACACAGA
genomic: TGTGTTTCTCTCGCTGTATGTTCATTGATAATGCTCTATAGATGTAGTAGgtaatttctt ... ttacttgcagTAAAGATCCGGGTTATATAAAAAAATCTGGTGGTTTGGGTAATCACACAGA
EST: gi|351029081|gb|FQ435281.1|FQ435281
EST:     TGTGTTTCTCTCGCTGTATGTTCATTGATAATGCTCTATAGATGTAGTAG                         TAAAGATCCGGGTTATATNNNNNNNTCTGGTGGTTTGGGTAATCACACAGA
genomic: TGTGTTTCTCTCGCTGTATGTTCATTGATAATGCTCTATAGATGTAGTAGgtaatttctt ... ttacttgcagTAAAGATCCGGGTTATATAAAAAAATCTGGTGGTTTGGGTAATCACACAGA
EST: gi|351030865|gb|FQ438901.1|FQ438901
EST:     TGTGTTTCTCTCGCTGTATGTTCATTGATAATGCTCTATAGATGTAGTAG                         TAAAGATCCGGGTTATATNNNNNNNTCTGGTGGTTTGGGTAATCACACAGA
genomic: TGTGTTTCTCTCGCTGTATGTTCATTGATAATGCTCTATAGATGTAGTAGgtaatttctt ... ttacttgcagTAAAGATCCGGGTTATATAAAAAAATCTGGTGGTTTGGGTAATCACACAGA
EST: gi|351018912|gb|FQ426411.1|FQ426411
EST:     TGTGTTTCTCTCGCTGTATGTTCATTGATAATGCTCTATAGATGTAGTAG                         TAAAGATCCGGGTTATATNNNNNNNTCTGGTGGTTTGGGTAATCACACAGA
genomic: TGTGTTTCTCTCGCTGTATGTTCATTGATAATGCTCTATAGATGTAGTAGgtaatttctt ... ttacttgcagTAAAGATCCGGGTTATATAAAAAAATCTGGTGGTTTGGGTAATCACACAGA
EST: gi|161717421|gb|FC068873.1|FC068873
EST:     TGTGTTTCTCTCGCTGTATGTTCATTGATAATGCTCTATAGATGTAGTAG                         TAAAGATCCGGGTTATATNNNNNNNTCTGGTGGTTTGGGTAATCACACAGA
genomic: TGTGTTTCTCTCGCTGTATGTTCATTGATAATGCTCTATAGATGTAGTAGgtaatttctt ... ttacttgcagTAAAGATCCGGGTTATATAAAAAAATCTGGTGGTTTGGGTAATCACACAGA