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TAGAGCAGATAGACAGCCTGAGTTCACACAGTTGGATATGGAATTGGCTTTCACTCCTTTGGAGGATATGCTGAGGCTCAATGAAGATTTGATAAGACAGgttagtatttctggtgcagggccatcagaagaccattctgtggattaaagaagaagacatgtcattgtgattcatctcatgcttgatttgggctgagaca...
species | Vitis vinifera |
transcript | Vv03s0088g00500.t01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TCACTCCTTTGGAGGATATGCTGAGGCTCAATGAAGATTTGATAAGACAG GTTTTTCTAGAGATTAAGGGCATCCAACTACCCAACCCTTTCCCAAGGCTCEST: gi|352786206|gb|FQ478817.1|FQ478817
genomic: TCACTCCTTTGGAGGATATGCTGAGGCTCAATGAAGATTTGATAAGACAGgttagtattt ... aaaattgcagGTTTTTCTAGAGATTAAGGGCATCCAACTACCCAACCCTTTCCCAAGGCTC
EST: TCACTCCTTTGGAGGATATGCTGAGGCTCAATGAAGATTTGATAAGACAG GTTTTTCTAGAGATTAAGGGCATCCAACTACCCAACCCTTTCCCAAGGCTCEST: gi|351046227|gb|FQ442605.1|FQ442605
genomic: TCACTCCTTTGGAGGATATGCTGAGGCTCAATGAAGATTTGATAAGACAGgttagtattt ... aaaattgcagGTTTTTCTAGAGATTAAGGGCATCCAACTACCCAACCCTTTCCCAAGGCTC
EST: TCACTCCTTTGGAGGATATGCTGAGGCTCAATGAAGATTTGATAAGACAG GTTTTTCTAGAGATTAAGGGCATCCAACTACCCAACCCTTTCCCAAGGCTC
genomic: TCACTCCTTTGGAGGATATGCTGAGGCTCAATGAAGATTTGATAAGACAGgttagtattt ... aaaattgcagGTTTTTCTAGAGATTAAGGGCATCCAACTACCCAACCCTTTCCCAAGGCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAGAGCAGATAGACAGCCTGAGTTCACACAGTTGGATATGGAATTGGCTTTCACTCCTTTGGAGGATATGCTGAGGCTCAATGAAGATTTGATAAGACAGgttagtatttctggtgcagggccatcagaagaccattctgtggattaaagaagaagacatgtcattgtgattcatctcatgcttgatttgggctgagaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cagaaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaagaag