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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGGGACCTGAAACTGATCAAGGAACCGTCTCAAAGATAAGAGATGCTATCAGACAACAAAGGGAAATCACTGTTCAGTTGATCAACTACACAAAGAGCGgtatggtgctaataatctgttcttagcttggagacatcacgttttactctctctctctctctctctctctctctctctctttttccccaaaacaattgctataccaaaatgattgattgcatggattacatgccttgcag

Basic information

species Vitis vinifera
transcript Vv03s0038g04210.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv03s0038g04210.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA16G19560.1 (Glycine max), 5'ss of exon 9
CAGGGACCTGAAACTGATCAAGGAACCGTCTCAAAGATAAGAGATGCTATCAGACAACAAAGGGAAATCACTGTTCAGTTGATCAACTACACAAAGAGCGgtatggtgctaataatctgttcttagcttggagacatcacgttttactctctctctctctctctctctc----tctctctctctttttccccaaaacaattgctataccaaaatgattgattgcatggattacatgccttgcag
|| ||||| ||||| ||||| | ||| || || | ||||||||||||||||||| ||||||||||||||||||| |||||||| ||||| || ||||| ||||       |||||   ||    |  ||  |   || || | | || ||||||||||||||   |       |  ||    |||  ||| |     | ||    |                                      
CAAGGACCAGAAACAGATCAGGCAACTGTTTCCAGGATAAGAGATGCTATCAGAGAACAAAGGGAAATCACTGTACAGTTGATAAACTATACTAAGAGTGgta-------aataactggtc---aaattatatctat-acttctgacgctctctctctctcttcattggaggatgacttgtccttcctcctcgttgtatttttcttttttc---------------------------------

upper sequence: Vv03s0038g04210.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA08G33560.1 (Glycine max), 5'ss of exon 7
CAGGGACCTGAAACTGATCAAGGAACCGTCTCAAAGATAAGAGATGCTATCAGACAACAAAGGGAAATCACTGTTCAGTTGATCAACTACACAAAGAGCGgtatggtgctaataatctgttcttagcttggagacatcacgttttactctctctctctctctctctctctctctctctctttttccccaaaacaattgctataccaaaatgattgattgcatggattacatgccttgcag
|| ||||| ||||| ||||| | ||| || || | |||||| |||||||||||| ||||||||||||||||||| |||||||| ||||| || ||||| ||||       |||||   ||    |  ||  |   || || | | ||| ||||||||| |   |       |  ||     || | || | | | ||| |||  |    |  |                           
CAAGGACCAGAAACAGATCAGGCAACTGTTTCCAGGATAAGGGATGCTATCAGAGAACAAAGGGAAATCACTGTACAGTTGATAAACTATACTAAGAGTGgta-------aataactggtc---aaattataactat-acttctaactgtctctctcttttcgttggaggatgacttgtccttcctcctaga-agttg-tatttctctttatt---------------------------