Sequence
atgc intronic sequence ATGC exonic sequenceTAGTAGCTTTTGTGAAGGCTCTTTGCAAAGTTTCCATGTCAGAGTTGCAGTCTCCTACGGATCCTCGTGTATTCAGCCTCACAAAAATTGTTGAGATTGCgtaagcttatgctcctttttctttccagtctctctcaaatattctcatcaaatttcaaaattttcattctgtgaatgcactgataaactaattttatttt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv03s0038g04090.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: LOC_Os06g41780.2 (Oryza sativa), 5'ss of exon 1
TAGTAGCTTTTGTGAAGGCTCTTTGCAAAGTTTCCATGTCAGAGTTGCAGTCTCCTACGGATCCTCGTGTATTCAGCCTCACAAAAATTGTTGAGATTGCgtaagcttatgctcctttttctt-tccagtctctctcaaatattctcatcaaatttcaaaattttcattctgtgaatgcactgat---aaactaattttatttt-
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TTGTTGCTTTTGTGAAAGCTCTTTGCAAGGTCTCAATGACTGAGTTGCAGTCTCCAACGGATCCTCGTATCTTCTGCCTTACAAAAATAGTAGAAATCGCgtaagaatttcctagatccacttgtaaaacctacctttcactagcagatagtagctgtgacccagtacttgtcaactattctaattctgaactaaattcgtgcag
upper sequence: Vv03s0038g04090.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G365185_T01 (Zea mays), 5'ss of exon 7
TAGTAGCTTTTGTGAAGGCTCTTTGCAAAGTTTCCATGTCAGAGTTGCAGTCTCCTACGGATCCTCGTGTATTCAGCCTCACAAAAATTGTTGAGATTGCgtaagcttatgctcctttttcttt-ccagtctctctcaaatattctcatcaaatttcaaaattttcattctgtgaatgcactgataaactaattttatttt----
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TTGTTGCTTTTGTGAAAGCTCTTTGCAAAGTTTCAATGACAGAGTTGCAGTCTCCTACAGATCCTCGTATTTTCTGCCTAACAAAGATTGTTGAGATTGCgtaagcttataatctatgacctatgtcaagctacatgaaat--tatgaatatgtttgtagacaatattttccaaaacgacctaattcga-agtttcattgcacag
upper sequence: Vv03s0038g04090.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G092586_T01 (Zea mays), 5'ss of exon 7
TAGTAGCTTTTGTGAAGGCTCTTTGCAAAGTTTCCATGTCAGAGTTGCAGTCTCCTACGGATCCTCGTGTATTCAGCCTCACAAAAATTGTTGAGATTGCgtaagcttatgctcctttttctttccag---tctc-tctcaaatattctcatcaaatttcaaaattt--tcattctgtgaatgcactgataaactaattttatttt-----
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TTGTTGCTTTTGTGAAGGCTCTTTGCAAGGTCTCAATGACTGAGCTGCAGTCTCCAACAGATCCTCGTATCTTCTGCCTTACTAAAATAGTAGAGATTGCgtaagaagattcctaaatttaatttaaaaaatctgatatttactgatggcaacagcagccacaacttgatgtttctttggctattctcattc-cgaactttgtttgtgcag
upper sequence: Vv03s0038g04090.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA02G48200.1 (Glycine max), 5'ss of exon 7
TAGTAGCTTTTGTGAAGGCTCTTTGCAAAGTTTCCATGTCAGAGTTGCAGTCTCCTACGGATCCTCGTGTATTCAGCCTCACAAAAATTGTTGAGATTGCgtaagcttatgctcctttttctttccag----tctctctcaaatattctcatcaaatttcaaaattttcattctgtgaatgcactgataaactaattttatttt
||||||| ||||| || || ||||| ||||||||||| |||||||| |||||||| || || || |||||||| ||||||| ||||| || || |||||||||| || | | |||| | || ||||| | |||| | || || | | ||| | | | | || | | |
TAGTAGCATTTGTCAAAGCACTTTGTAAAGTTTCCATTTCAGAGTTACAGTCTCCAACAGACCCCCGTGTATTTGGCCTCACTAAAATAGTAGAAATTGCgtaagtttctttgtcctttttatgatagatgttctctttgtgcaattcattcagatttctgaagtaataattttcttgacatatggagctttcacagtga----
upper sequence: Vv03s0038g04090.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA14G00230.1 (Glycine max), 5'ss of exon 8
TAGTAGCTTTTGTGAAGGCTCTTTGCAAAGTTTCCATGTCAGAGTTGCAGTCTCCTACGGATCCTCGTGTATTCAGCCTCACAAAAATTGTTGAGATTGCgtaagcttatgctcctttttctttccagtctctctcaaatattctcatcaaatttcaaaattttcattctgtgaatgcactgataaactaattttatttt----
||||||| ||||| || || ||||| ||||||||||| |||||||| |||||||| || || || |||||||| ||||||| ||||| || || |||||||||| || | | |||| | || |||| | | | ||| |||| | || | | | | | ||| | | | || |
TAGTAGCATTTGTTAAAGCACTTTGTAAAGTTTCCATTTCAGAGTTACAGTCTCCAACAGACCCCCGTGTATTTGGCCTCACTAAAATAGTAGAAATTGCgtaagtttctttgtcctttttatgatagatgttctctt-tgtgcaattca---ttcagatttcttaagtaataattttcttgacatatggagcttgtacagtga
upper sequence: Vv03s0038g04090.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT4G38200.1 (Arabidopsis thaliana), 5'ss of exon 7
TAGTAGCTTTTGTGAAGGCTCTTTGCAAAGTTTCCATGTCAGAGTTGCAGTCTCCTACGGATCCTCGTGTATTCAGCCTCACAAAAATTGTTGAGATTGCgtaagcttatgctccttt----ttctttccagtctctctcaaatattc--tcatcaaatttcaaaattttcattctgtgaatgcactgataaactaattttatttt----------------------------------------------------------
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TAGTAGCATTTGTTAAAGCTCTATGCAAAGTCTCTATGTCAGAACTGCAGTCTCCTACGGATCCTCGAGTATTTAGCCTTACAAAATTAGTTGAGATCGCgtaagaatttcttcttttgatactctctttagaacacatagaatgagaaatggacatattgaatacatctcatcttggctacagaactggatatcgagtgagcatcatgatagtctaataagatgtcaacatatcatttacatatctcttttcttgctgtacag
upper sequence: Vv03s0038g04090.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: EFJ15473 (Selaginella moellendorffii), 5'ss of exon 7
TAGTAGCTTTTGTGAAGGCTCTTTGCAAAGTTTCCATGTCAGAGTTGCAGTCTCCTACGGATCCTCGTGTATTCAGCCTCACAAAAATTGTTGAGATTGCgtaagcttatgctcctttttctttccagtctctctcaaatattctcatcaaatttcaaaattttcattctgtgaatgcactgataaactaattttatttt
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TTGTGGATTTTGTAAAAGCGCTTTGTAAAGTTTCGATGGAGGAGCTACGATCTCCAACTGATCCTCGGGTATTCAGCCTCACCAAAATTGTTGAAATATCgtaag--taatctgtggcttctttctggtctc-----aattttct----aaattacgctttttgcag---------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161713726|gb|FC063751.1|FC063751EST: TCTCCTACAGATCCTCGTGTATTCAGCCTCACAAAAATTGTTGAGATTGC GCATTACAATATGAACCGCATCAGACTTGTATGGTCTCGCATATGGAATGT
genomic: TCTCCTACGGATCCTCGTGTATTCAGCCTCACAAAAATTGTTGAGATTGCgtaagcttat ... tttgtttcagGCATTACAATATGAACCGCATCAGACTTGTATGGTCTCGCATATGGAATGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TAGTAGCTTTTGTGAAGGCTCTTTGCAAAGTTTCCATGTCAGAGTTGCAGTCTCCTACGGATCCTCGTGTATTCAGCCTCACAAAAATTGTTGAGATTGCgtaagcttatgctcctttttctttccagtctctctcaaatattctcatcaaatttcaaaattttcattctgtgaatgcactgataaactaattttatttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgataaa