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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCGATTGCTCTTCTTTATGACCTTGGTTTATTTAAGAGTGCTATTGCTCAAGGCTTACAGTCGAAATCCAGTGTCCAAGACTTCATCATTTGTATAGAGgtagtttttctctttggctggatctggtttttctttcgctgatgcatgattgtatgtattatatcagcacattggttgatattccttgaatttttattac...

Basic information

species Vitis vinifera
transcript Vv03s0038g03670.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv03s0038g03670.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA04G00250.1 (Glycine max), 5'ss of exon 5
GGCGATTGCTCTTCTTTATGACCTTGGTTTATTTAAGAGTGCTATTGCTCAAGGCTTACAGTCGAAATCCAGTGTCCAAGACTTCATCATTTGTATAGAGgta---gtttttctctttggctggatctggtttttctttcgctgatgcatgattgtat---gtattatatcagcacattggttgatattccttgaatttttattac
||| |||||||| || |    | ||||||| || |||||| | |||||||||||||| ||||  || || ||||||||||| ||||||||||| || ||||||   ||  ||| |||  | |     || || || |||   |   |||  |||| ||   | | | || |||||  ||  |||| ||  ||||  | | |||   
GGCAATTGCTCTCCTATCCACCTTTGGTTTGTTCAAGAGTCCCATTGCTCAAGGCTTGCAGTTCAAGTCAAGTGTCCAAGATTTCATCATTTGCATTGAGgtagatgtccttcacttaagtttaccttgcttctttttttttttccgca--attgcatccggaactgtaacagcattttcattga-atgtcttgtctatctat---

upper sequence: Vv03s0038g03670.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA06G00300.1 (Glycine max), 5'ss of exon 5
GGCGATTGCTCTTCTTTATGACCTTGGTTTATTTAAGAGTGCTATTGCTCAAGGCTTACAGTCGAAATCCAGTGTCCAAGACTTCATCATTTGTATAGAGgta---gtttttctctttggctggatctggtttttctttcgctgatgcatgattgtatgtattatatcagcacattggttga-tattccttgaatttttattac
||| |||||||| || |    | ||||||| || || ||| | |||||||||||||| ||||  || || ||||||||||| ||||||||||| || ||||||   ||  ||| |||  | | |   || || || |||   ||     ||  | |  | | | || || ||  ||  |||| | ||   |  ||| |   |  
GGCAATTGCTCTCCTATCCACCTTTGGTTTGTTCAAAAGTCCCATTGCTCAAGGCTTGCAGTTTAAGTCAAGTGTCCAAGATTTCATCATTTGCATCGAGgtagatgtccttcacttcagtttgccttgcttcttttttt-ttggcaattgcatctg-gaactgtaacatcattttcattgaatgttttgtctattatatct--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161716138|gb|FC068057.1|FC068057
EST:     AAGGCTTACAGTCGAAATCCAGTGTCCAAGACTTCATCATTTGTATGGAG                         ATGGGCATCGCTTCAATTGTTCACCTGTATGTATTCCCTGCCAAGCCTTAT
genomic: AAGGCTTACAGTCGAAATCCAGTGTCCAAGACTTCATCATTTGTATAGAGgtagtttttc ... tccagcacagATGGGCATCGCTTCAATTGTTCACCTGTATGTATTCCCTGCCAAGCCTTAT