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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAACCAAATGTTCATACATATGGTGCACTTATTGATGGTTGTGGTAGAGCTGGACAAGTTGCTAAGGCATTTGGTGCTTATGGAATAATGAGGTCCAAGgtatgattttagtcatagattttctaatctcctttgttagcacttttctttttcgttccaatgatttcatgtctatggtagtttgtacaagaacatcccagcttgttcatttttgcttctgcattttgaatattaaataagtttcaaactgataagatgttgatatgcagtag

Basic information

species Vitis vinifera
transcript Vv03s0038g01320.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv03s0038g01320.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: LOC_Os10g10170.2 (Oryza sativa), 5'ss of exon 5
GGAACCAAATGTTCATACATATGGTGCACTTATTGATGGTTGTGGTAGAGCTGGACAAGTTGCTAAGGCATTTGGTGCTTATGGAATAATGAGGTCCAAGgtatgattttagtcatagattttctaatctcctttgttagcacttttctttttcgttccaatgatttca-tgtctatggtagtttg--tacaagaacatcccagcttgttcatttttgctt--ctgcattttgaatattaaataagtttcaaactgataagatgttgatatgcagtag
 || ||||||||| | |||||| ||||||| |||||||| ||||  | |||||| ||||| || || ||||||||||||||||| || ||||| || |||||        |||  ||||| || |    || |||  ||  || | ||||       ||  || |   | ||    ||||   |    |  | |  | | |||  ||  |     || ||   |   | ||  | ||                                         
AGAGCCAAATGTTAACACATATAGTGCACTGATTGATGGCTGTGCAAAAGCTGGTCAAGTAGCAAAAGCATTTGGTGCTTATGGTATCATGAGTTCAAAGgtga------agtggtagatatttt---ttctttttatattacatgtcttccattcacctgtgctgcaaatgctactggtgaatcacttctatgcgctttccatgtttgttgaacttactgggccatacttgcagtag----------------------------------------

upper sequence: Vv03s0038g01320.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA09G35270.1 (Glycine max), 5'ss of exon 6
GGAACCAAATGTTCATACATATGGTGCACTTATTGATGGTTGTGGTAGAGCTGGACAAGTTGCTAAGGCATTTGGTGCTTATGGAATAATGAGGTCCAAGgtatgattttagtcatagat-tttctaatctcctttgttagcacttttctttttcgttccaatgatttcatgtctatggtagtttgtacaagaacatcccagcttgttcatttttgcttctgcattttgaatattaaataagtttcaaactgataagatgttgatatgcagtag
|||||| ||||||||||| ||||| ||||||||||||||||||| ||||||||| ||||| ||||| |||||||||||||||||||| |||||||| ||||||  ||| | |  | |  | |||||||    || | ||  || |  |             |||| || |  ||        ||| ||   | |||| |     || |  ||  |||    |                                                    
GGAACCTAATGTTCATACCTATGGAGCACTTATTGATGGTTGTGCTAGAGCTGGGCAAGTGGCTAAAGCATTTGGTGCTTATGGAATTATGAGGTCAAAGgtacaattattgcaaaatgtatttctaaagaactatattcacagtggt-------------atgagttgagttcctcccagttttttaattgtacatgctgatgtgatgtttaatgcagtag----------------------------------------------------

upper sequence: Vv03s0038g01320.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA12G03760.1 (Glycine max), 5'ss of exon 7
GGAACCAAATGTTCATACATATGGTGCACTTATTGATGGTTGTGGTAGAGCTGGACAAGTTGCTAAGGCATTTGGTGCTTATGGAATAATGAGGTCCAAGgtatgattttagtca-tagattttctaatctcctttgttagcacttttctttttcgttccaatgatttcatgtctatggtagtttgtacaagaacatcccagcttgttcatttttgcttctgcattttgaatattaaataagtttcaaactgataagatgttgatatgcagtag
|||||| || |||||||| ||||| |||||||||| |||||||| ||||||||| ||||||||||| |||||||||||||||||||| |||||||| ||||||  ||| | |  | | |  |||||||    || | ||  || |  | |   | |    | |   | |  || | |  || ||       | |||| |     || |  ||  |||    |                                                    
GGAACCTAACGTTCATACCTATGGAGCACTTATTGGTGGTTGTGCTAGAGCTGGGCAAGTTGCTAAAGCATTTGGTGCTTATGGAATTATGAGGTCAAAGgtacaattattgcaacttgtatttctaaagaactatattcacagtggtatgagttg----agttcctcccagttttttttaatt-------gtacatgctgatgtgatgtttaatgcagtag----------------------------------------------------

upper sequence: Vv03s0038g01320.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT4G34830.1 (Arabidopsis thaliana), 5'ss of exon 7
GGAACCAAATGTTCATACATATGGTGCACTTATTGATGGTTGTGGTAGAGCTGGACAAGTTGCTAAGGCATTTGGTGCTTATGGAATAATGAGGTCCAAGgtatg---attttagtcatagattttctaatctcctttgttagcacttttctttttcgttccaatgatttcatgtctatggtagtttgtacaagaacatcccagcttgttcatttttgcttctgcattttgaatattaaataagtt-tcaaactgataagatgttgatatgcagtag
|||| | ||| |||| |||| |||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||| ||||||||  | ||||| |||||| |        |    | |||   ||  | || | ||||   | ||       |    || ||   |||||| |||  ||  ||| |      |  ||   |||| |  || ||   |||||| ||| |||| | |||| | || | | | |||| | |||||   |||||||||
GGAAGCCAATCTTCACACATTTGGTGCACTTATTGATGGCTGTGCTAGAGCTGGACAAGTAGCTAAGGCATTTGGTGCGTATGGAATTTTAAGGTCTAAGgtaagcatgccacaagtttggatgccctcctatcatgtgtttagatttcaaaaaata--ccctatttcttcatggctacagttttttttttttttaattct--gcttat--atgttcatttctgc-tttggaatctcaaatcaattattacattgatgacatgttcg-atgcagtag