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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTGGCGTTTTCTGCATCATTGCGGACAACCTGATCAAATCACAGATCTACAGCGACTATGTCCAAgtatacgtctgcctttgagctttctttaattttacagcatcattggcagttgagatttttgtagcattgcaacttcttagttgaagacgattatctctcttttcactaaaatatgcttgttctgattctgtttctgattcttttgcctctaacaaggtttgacaaactttgatttgtggaatgcag

Basic information

species Vitis vinifera
transcript Vv02s0488g00020.t01
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110377324|gb|EC942388.1|EC942388
EST:     TCATTGCGGACAACCTGATCAAATCACAGATCTACAGCGACTATGTCCAA                         ACTCATTTGGCTCCCAGTGGTTATCTTAAACTACCAAAT
genomic: TCATTGCGGACAACCTGATCAAATCACAGATCTACAGCGACTATGTCCAAgtatacgtct ... tggaatgcagACTCATTTGGCTCCCAGTGGTTATCTTAAACTACCAAAT
EST: gi|33401770|gb|CF207397.1|CF207397
EST:     TCATTGCGGACAACCTGATCAAATCACAGATCTACAGCGACTATGTCCAA                         ACTCATTTGGCTCCCAGTGGTTATCTTAAACTACCAAAT
genomic: TCATTGCGGACAACCTGATCAAATCACAGATCTACAGCGACTATGTCCAAgtatacgtct ... tggaatgcagACTCATTTGGCTCCCAGTGGTTATCTTAAACTACCAAAT
EST: gi|110387835|gb|EC952533.1|EC952533
EST:     CACAGATCTACAGCGACTATGTCCAA                         ACTCATTTGGCTCCCAGTGGTTATCTTAAACTACCAAAT
genomic: CACAGATCTACAGCGACTATGTCCAAgtatacgtct ... tggaatgcagACTCATTTGGCTCCCAGTGGTTATCTTAAACTACCAAAT