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GTGTTAGATGAAGCAGATCGTATGCTGGACATGGGATTTGAACCAGAAGTTCGCTCTATATTAAGCCAGACATGTCCTGgtatgtgataaaatattaacagtttcctcctgctgcttcttctttcttctctctctctctctcaatctatatacactgttctttttttgaatttgaattc...
species | Vitis vinifera |
transcript | Vv02s0109g00380.t01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CATGGGATTTGAACCAGAAGTTCGCTCTATATTAAGCCAGACATGTCCTG CTCGCCAAATGGTAATGTTTAGTGCAACATGGCCTCTACCTGTTCATCAATEST: gi|27586192|gb|CB008887.1|CB008887
genomic: CATGGGATTTGAACCAGAAGTTCGCTCTATATTAAGCCAGACATGTCCTGgtatgtgata ... aattttgcagCTCGCCAAATGGTAATGTTTAGTGCAACATGGCCTCTACCTGTTCATCAAT
EST: CATGGGATTTGAACCAGAAGTTCGCTCTATATTAAGCCAGACATGTCCTG CTCGCCAAATGGTAATGTTTAGTGCAACATGGCCTCTACCTGTTCATCAATEST: gi|161709864|gb|FC059337.1|FC059337
genomic: CATGGGATTTGAACCAGAAGTTCGCTCTATATTAAGCCAGACATGTCCTGgtatgtgata ... aattttgcagCTCGCCAAATGGTAATGTTTAGTGCAACATGGCCTCTACCTGTTCATCAAT
EST: CATGGGATTTGAACCAGAAGTTCGCTCTATATTAAGCCAGACATGTCCTG CTCGCCAAATGGTAATGTTTAGTGCAACATGGCCTCTACCTGTTCATCAATEST: gi|110410371|gb|EC976052.1|EC976052
genomic: CATGGGATTTGAACCAGAAGTTCGCTCTATATTAAGCCAGACATGTCCTGgtatgtgata ... aattttgcagCTCGCCAAATGGTAATGTTTAGTGCAACATGGCCTCTACCTGTTCATCAAT
EST: CATGGGATTTGAACCAGAAGTTCGCTCTATATTAAGCCAGACATGTCCTG CTCGCCAAATGGTAATGTTTAGTGCAACATGGCCTCTACCTGTTCATCAATEST: gi|27587019|gb|CB009714.1|CB009714
genomic: CATGGGATTTGAACCAGAAGTTCGCTCTATATTAAGCCAGACATGTCCTGgtatgtgata ... aattttgcagCTCGCCAAATGGTAATGTTTAGTGCAACATGGCCTCTACCTGTTCATCAAT
EST: GGGATTTGAACCAGAAGTTCGCTCTATATTAAGCCAGACATGTCCTG CTCGCCAAATGGTAATGTTTAGTGCAACATGGCCTCTACCTGTTCATCAATEST: gi|161717360|gb|FC065275.1|FC065275
genomic: GGGATTTGAACCAGAAGTTCGCTCTATATTAAGCCAGACATGTCCTGgtatgtgata ... aattttgcagCTCGCCAAATGGTAATGTTTAGTGCAACATGGCCTCTACCTGTTCATCAAT
EST: CATGGGATTTGAACCAGAAGTTCGCTCTATATTAAGCCAGACATGTCCTG CTCGCCAAATGGTAATGTTTAGTGCAACATGGCCTCTACCTGTTCATCAAT
genomic: CATGGGATTTGAACCAGAAGTTCGCTCTATATTAAGCCAGACATGTCCTGgtatgtgata ... aattttgcagCTCGCCAAATGGTAATGTTTAGTGCAACATGGCCTCTACCTGTTCATCAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGTTAGATGAAGCAGATCGTATGCTGGACATGGGATTTGAACCAGAAGTTCGCTCTATATTAAGCCAGACATGTCCTGgtatgtgataaaatattaacagtttcctcctgctgcttcttctttcttctctctctctctctcaatctatatacactgttctttttttgaatttgaattc
- - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gataaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttcctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctctc