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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCATACTACATTCCAGTATGCTGGTACTGACGGAAAGCGTCATAGACTTCGGGAAGCGAAGGTTTTCTATGATCCACCAGAATATTATGATTCACCAGgtaattcttctagatgttatctatatcctgtagagttctattataatgcatttcatccccatgaattacttgctattagctttagtccttgcaaagtgca...

Basic information

species Vitis vinifera
transcript Vv02s0087g00740.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0087g00740.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: LOC_Os03g38930.1 (Oryza sativa), 5'ss of exon 3
GTGCATACTACATTCCAGTATGCTGGTACTGACGGAAAGCGTCATAGACTTCGGGAAGCGAAGGTTTTCTATGATCCACCAGAATATTATGATTCACCAGgtaattcttctagatgttatctatatcctgtagagttctattataatgcatttcat--ccccatgaatta--cttgctattagctttagtccttgcaaagtgca
||||||||||| ||||||||||| |||||||  ||||||||||||||| | || ||||| | | |||||| |||||  |||  ||| ||||| ||||||||||  | |  |   ||        ||   | | | |||| |   |  |   |||||  |  ||||  | |   |    ||  | | ||||   | |||| ||| 
GTGCATACTACTTTCCAGTATGCAGGTACTGTGGGAAAGCGTCATAGATTGCGTGAAGCAATGCTTTTCTTTGATCAGCCATCATACTATGACTCACCAGgtatgtttattctctgaccctatcatgacgga-acttctttgggacagaggttcatgacttcatgtttaaagatcatgatgtgttctagtg--tacaaa-tgcc

upper sequence: Vv02s0087g00740.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT2G35610.1 (Arabidopsis thaliana), 5'ss of exon 6
GTGCATACTACATTCCAGTATGCTGGTACTGACGGAAAGCGTCATAGACTTCGGGAAGCGAAGGTTTTCTATGATCCACCAGAATATTATGATTCACCAGgtaattcttctagatgttatctatatcctgtagagttctattataatgcatttcatccccatgaattacttgctattagctttagtcct-tgcaaagtgca
|||||||| |||||||||||||| ||||| || ||||| || || || ||||| || | || |||||||||||| ||||||||||||||||||||||||||||||  ||||   |||||    | | |   |    |||  | |||||        |   || ||        | | | ||  |   |  ||||       
GTGCATACAACATTCCAGTATGCAGGTACCGAAGGAAAACGCCACAGGCTTCGAGAGGGGATGGTTTTCTATGACCCACCAGAATATTATGATTCACCAGgtaata-ttctttctgttaagattcttcaacattaatcttgt-taatggggaaagccaaaatcaac-----attgtaaactccaacacaatgcag------