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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAACTGAAAGTGAGGCAAGTCATGGACTTGTTCCCCCTGCTACAGCCATAGCTTTGATGGGAAAAGCCGGATCAATTCTGCTTCTCACGATGCTTTTCATgtgagttgcagaatatatcaaacccccacttcaagatttcttcattttgccctaaacatgattttgttttcctatgctcatcag

Basic information

species Vitis vinifera
transcript Vv02s0033g01370.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0033g01370.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA04G14790.1 (Glycine max), 5'ss of exon 8
TAACTGAAAGTGAGGCAAGTCATGGACTTGTTCCCCCTGCTACAGCCATAGCTTTGATGGGAAAAGCCGGATCAATTCTGCTTCTCACGATGCTTTTCATgtgagttg----cagaatatatcaaacccccacttcaagatttcttcatt---ttg---ccctaaacatgattttgttttcctat---gctcatcag--------------------------------------------------------------
||| ||||| ||| ||| | | ||||||||||||||||||||| ||  ||||||||||||| ||||  ||||| ||||| ||||| || |||||||| |||| ||||     ||||||  ||        | ||| || || |||  ||    |||       ||||    |     ||| |||    ||| || ||                                                              
TAAATGAAAATGAAGCAGGCCGTGGACTTGTTCCCCCTGCTACGGCTGTAGCTTTGATGGGGAAAGGAGGATCTATTCTTCTTCTTACCATGCTTTTTATgtaagttactatcagaatccattgggaatactctt-aatatgtctagataagattgaaatagcaaacggattaacaatttactacaaggcttataagaaaactatctagcctctttgttctactttctgatggttttgaccttttgatatactcaccag