1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GATCCTAGACTTTCATGCTTTGGTATGATGAAGAATAGTAGAGATGGAAAAAGTTATAGCACAAACTTAGCCTTTACACCTCCTGAATATCTGAGGACTGgtatttgttctcacttgccccactgtatctctcttgttttttttttgcttcgtctctgctagctcgatatagatggaatcattggtaatgctgtctattg...
species | Vitis vinifera |
transcript | Vv02s0025g03550.t01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: AAGTTATAGCACAAACTTAGCCTTTACACCTCCTGAATATCTGAGGACTG GAAGGGTAACACCTGAAAGTGTAATGTATAGTTTTGGCACCCTTTTGCTTGEST: gi|349812356|gb|FQ406377.1|FQ406377
genomic: AAGTTATAGCACAAACTTAGCCTTTACACCTCCTGAATATCTGAGGACTGgtatttgttc ... ttttctgcagGAAGGGTAACACCTGAAAGTGTAATGTATAGTTTTGGCACCCTTTTGCTTG
EST: AAGTTATAGCACAAACTTAGCCTTTACACCTCCTGAATATCTGAGGACTG GAAGGGTAACACCTGAAAGTGTAATGTATAGTTTTGGCACCCTTTTGCTTGEST: gi|110718884|gb|EE096229.1|EE096229
genomic: AAGTTATAGCACAAACTTAGCCTTTACACCTCCTGAATATCTGAGGACTGgtatttgttc ... ttttctgcagGAAGGGTAACACCTGAAAGTGTAATGTATAGTTTTGGCACCCTTTTGCTTG
EST: AAGTTATAGCACAAACTTAGCCTTTACACCTCCTGAATATCTGAGGACTG GAAGGGTAACACCTGAAAGTGTAATGTATAGTTTTGGCACCCTTTTGCTTGEST: gi|349812229|gb|FQ411824.1|FQ411824
genomic: AAGTTATAGCACAAACTTAGCCTTTACACCTCCTGAATATCTGAGGACTGgtatttgttc ... ttttctgcagGAAGGGTAACACCTGAAAGTGTAATGTATAGTTTTGGCACCCTTTTGCTTG
EST: AAGTTATAGCACAAACTTAGCCTTTACACCTCCTGAATATCTGAGGACTG GAAGGGTAACACCTGAAAGTGTAATGTATAGTTTTGGCACCCTTTTGCTTGEST: gi|349818651|gb|FQ403286.1|FQ403286
genomic: AAGTTATAGCACAAACTTAGCCTTTACACCTCCTGAATATCTGAGGACTGgtatttgttc ... ttttctgcagGAAGGGTAACACCTGAAAGTGTAATGTATAGTTTTGGCACCCTTTTGCTTG
EST: AAGTTATAGCACAAACTTAGCCTTTACACCTCCTGAATATCTGAGGACTG GAAGGGTAACACCTGAAAGTGTAATGTATAGTTTTGGCACCCTTTTGCTTGEST: gi|351042322|gb|FQ442789.1|FQ442789
genomic: AAGTTATAGCACAAACTTAGCCTTTACACCTCCTGAATATCTGAGGACTGgtatttgttc ... ttttctgcagGAAGGGTAACACCTGAAAGTGTAATGTATAGTTTTGGCACCCTTTTGCTTG
EST: AAGTTATAGCACAAACTTAGCCTTTACACCTCCTGAATATCTGAGGACTG GAAGGGTAACACCTGAAAGTGTAATGTATAGTTTTGGCACCCTTTTGCTTG
genomic: AAGTTATAGCACAAACTTAGCCTTTACACCTCCTGAATATCTGAGGACTGgtatttgttc ... ttttctgcagGAAGGGTAACACCTGAAAGTGTAATGTATAGTTTTGGCACCCTTTTGCTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATCCTAGACTTTCATGCTTTGGTATGATGAAGAATAGTAGAGATGGAAAAAGTTATAGCACAAACTTAGCCTTTACACCTCCTGAATATCTGAGGACTGgtatttgttctcacttgccccactgtatctctcttgttttttttttgcttcgtctctgctagctcgatatagatggaatcattggtaatgctgtctattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gccccac