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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGACCGATGCTCGCTGCAAAAGATGCCAGGAAAAAAAAGTGGGTGTAACAGACATCATCCATGCAGGAAATGCAGACCGCTACCAGgttcttgcatttcttcttgttacacttcaactttttaaaattatgttatatgttctctatgtatcatgtgttagtaacatgcttgtacaccatcaaaaaa...

Basic information

species Vitis vinifera
transcript Vv02s0025g03510.t01
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110399087|gb|EC965575.1|EC965575
EST:     AAGTGGGTGTAACAGACATCATCCATGCAGGAAATGCAGACCGCTACCAG                         TTGGAGTGCATTGCCTGTGGTAACAACTGGTATGCTCCCAGAGATGAGATT
genomic: AAGTGGGTGTAACAGACATCATCCATGCAGGAAATGCAGACCGCTACCAGgttcttgcat ... ttggtttcagTTGGAGTGCATTGCCTGTGGTAACAACTGGTATGCTCCCAGAGATGAGATT
EST: gi|352763506|gb|FQ473209.1|FQ473209
EST:     NNGTGGGTGTAACAGACATCATCCATGCAGGAAATGCAGACCGCTACCAG                         TTGGAGTGCATTGCCTGTGGTAACAACTGGTATGCTCCCAGAGATGAGATT
genomic: AAGTGGGTGTAACAGACATCATCCATGCAGGAAATGCAGACCGCTACCAGgttcttgcat ... ttggtttcagTTGGAGTGCATTGCCTGTGGTAACAACTGGTATGCTCCCAGAGATGAGATT
EST: gi|110708855|gb|EE086872.1|EE086872
EST:     NNGTGGGTGTAACAGACATCATCCATGCAGGAAATGCAGACCGCTACCAG                         TTGGAGTGCATTGCCTGTGGTAACAACTGGTATGCTCCCAGAGATGAGATT
genomic: AAGTGGGTGTAACAGACATCATCCATGCAGGAAATGCAGACCGCTACCAGgttcttgcat ... ttggtttcagTTGGAGTGCATTGCCTGTGGTAACAACTGGTATGCTCCCAGAGATGAGATT
EST: gi|34550295|gb|CF518513.1|CF518513
EST:     NNGTGGGTGTAACAGACATCATCCATGCAGGAAATGCAGACCGCTACCAG                         TTGGAGTGCATTGCCTGTGGTAACAACTGGTATGCTCCCAGAGATGAGATT
genomic: AAGTGGGTGTAACAGACATCATCCATGCAGGAAATGCAGACCGCTACCAGgttcttgcat ... ttggtttcagTTGGAGTGCATTGCCTGTGGTAACAACTGGTATGCTCCCAGAGATGAGATT
EST: gi|110380140|gb|EC945385.1|EC945385
EST:     GTGGGTGTAACAGACATCATCCATGCAGGAAATGCAGACCGCTACCAG                         TTGGAGTGCATTGCCTGTGGTAACAACTGGTATGCTCCCAGAGATGAGATT
genomic: GTGGGTGTAACAGACATCATCCATGCAGGAAATGCAGACCGCTACCAGgttcttgcat ... ttggtttcagTTGGAGTGCATTGCCTGTGGTAACAACTGGTATGCTCCCAGAGATGAGATT
EST: gi|37184086|gb|CF603440.1|CF603440
EST:     NNGTGGGTGTAACAGACATCATCCATGCAGGAAATGCAGACCGCTACCAG                         TTGGAGTGCATTGCCTGTGGTAACAACTGGTATGCTCCCAGAGATGAGATT
genomic: AAGTGGGTGTAACAGACATCATCCATGCAGGAAATGCAGACCGCTACCAGgttcttgcat ... ttggtttcagTTGGAGTGCATTGCCTGTGGTAACAACTGGTATGCTCCCAGAGATGAGATT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATGACCGATGCTCGCTGCAAAAGATGCCAGGAAAAAAAAGTGGGTGTAACAGACATCATCCATGCAGGAAATGCAGACCGCTACCAGgttcttgcatttcttcttgttacacttcaactttttaaaattatgttatatgttctctatgtatcatgtgttagtaacatgcttgtacaccatcaaaaaa

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaatta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcaaaaa