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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCAAGAGTATGGCCAGCTTGGTGAAATAGCTATTCGTAGCTATACTCAACAAATTCTGTCAGGGCTTGCATATTTGCATGCTAAAAACACTGTCCATAGgtaagttagatcatcttacattgttggtttggttatcctaggctatcattcatcactcacccccaatgaatctcatctgtttttgtcatcttagaacatctgtgctaattaggtaagttttgtatcctgtttag

Basic information

species Vitis vinifera
transcript Vv02s0025g03370.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0025g03370.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: LOC_Os04g47240.2 (Oryza sativa), 5'ss of exon 6
TTCAAGAGTATGGCCAGCTTGGTGAAATAGCTATTCGTAGCTATACTCAACAAATTCTGTCAGGGCTTGCATATTTGCATGCTAAAAACACTGTCCATAGgtaagttagatcatcttacattgttggtttggttatcctaggctatcattcatcactc-acccccaatgaatctcatctgtttttgtcatcttagaacatctgtgctaattaggtaagttttgtatcctgtttag
| ||||||||||| ||||||||||||  ||| || || ||||| || || || || || |||||| | || ||||||||||| || || || |||||||||||        ||  ||   | |||   |   || || | || |    |  |||  |  |       || |  | ||  ||  |  |||||     |||  | |||                             
TACAAGAGTATGGACAGCTTGGTGAACAAGCAATACGCAGCTACACACAGCAGATACTTTCAGGGTTGGCTTATTTGCATGCGAAGAATACAGTCCATAGgtag-------caatttctttggttttctctcttttctttggtttgtttgtatcggtggaattatggtgtaatt-ataagtcctgttcatc-----acaattttgcag---------------------------

upper sequence: Vv02s0025g03370.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA11G02520.1 (Glycine max), 5'ss of exon 8
TTCAAGAGTATGGCCAGCTTGGTGAAATAGCTATTCGTAGCTATACTCAACAAATTCTGTCAGGGCTTGCATATTTGCATGCTAAAAACACTGTCCATAGgtaagttagatcatcttacattgttggtttggttatcctaggctatcattcatcactcacccccaatgaatctcatctgtttttgtcatcttagaacatctgtgctaattaggtaagttttgtatcctgtttag
||||| |||||||||||||| ||||||| | ||||||||  |||||||  |||||||||| ||| ||||| ||||| ||||||||||||||||| ||||||| |||    |        ||        ||  |||| |    |    ||  ||| ||| |       ||  | | || ||  |||  ||||| ||| | | | |   ||    || |  || ||  |  | ||
TTCAACAGTATGGCCAGCTTAGTGAAATTGTTATTCGTAATTATACTCGGCAAATTCTGTTAGGTCTTGCTTATTTACATGCTAAAAACACTGTTCATAGgtgagtcttgttgatcattataacca-catgcctatcttcaagttctgtt--tcaatcatc-------aacttta-ctattaatgt--tctta-aacttattttcctcttgtccaattactggattttactcag

upper sequence: Vv02s0025g03370.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA01G42960.1 (Glycine max), 5'ss of exon 5
TTCAAGAGTATGGCCAGCTTGGTGAAATAGCTATTCGTAGCTATACTCAACAAATTCTGTCAGGGCTTGCATATTTGCATGCTAAAAACACTGTCCATAGgtaagttagatcatcttacattgttggtttggttatcctaggctatcattcatcactcacccccaatgaatctcatctgtttttgtcatcttagaacatctgtgctaattaggtaagttttgtatcctgtttag
||||| |||||||||||||| ||||||| | ||||||||  |||||||  |||||||||| ||| ||||| ||||| |||||||| |||||||| ||||||| |||    |        ||        ||  |||| |    |    ||  ||| | | |       ||  | | || ||  |||  ||||| ||| | | | |   ||    || |  || ||  |  | ||
TTCAACAGTATGGCCAGCTTAGTGAAATTGTTATTCGTAATTATACTCGGCAAATTCTGTTAGGTCTTGCTTATTTACATGCTAAGAACACTGTTCATAGgtgagtcttgttgatcattataacccacatgactatcttcaagttctgtt--tcaattatc-------aacttta-ctattaatgt--tctta-aacttattttcctcttgtccaattactggattttactcag

upper sequence: Vv02s0025g03370.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT1G63700.1 (Arabidopsis thaliana), 5'ss of exon 5
TTCAAGAGTATGGCCAGCTTGGTGAAATAGCTATTCGTAGCTATACTCAACAAATTCTGTCAGGGCTTGCATATTTGCATGCTAAAAACACTGTCCATAGgtaagttagatcatcttacattgttggtttggttatcctaggctatcattcatcactcacccccaatgaatctcatctgtttttgtcatcttagaacatctgtgctaattaggtaagttttgtatcctgtttag
||||||||||||| ||  ||||||| |  || ||||||| ||| || ||||||||| | |||||||| ||||||||||| || ||||| ||||| ||||||| ||  ||   ||  ||     ||  | || |    |   | | || ||||||  |||        ||   | |  ||    ||   | | |    ||                                   
TTCAAGAGTATGGACAATTTGGTGAGAATGCCATTCGTAACTACACACAACAAATTTTATCAGGGCTCGCATATTTGCACGCCAAAAATACTGTTCATAGgtgaggcagtgaattctat-ccattcttctgatacctc---gttttccttcatccttcattagttg-gagaattagatgaacatggattttaattttattcag-------------------------------