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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCAGCAAATCCTTTTGGAACTCTACCTGCAATGCCTCAAATGTCGATTGGTCGCACTGGAACTGCACCTTCTATTCAATATGGGATTTCTAGCATGCCTgtaaatatgatctgtcctgaaccttggtttatttgctttagaaatttgatttggttcagtttccttttttttcattgttaatcaatgtttatgatagcagttgctactcttatgtgccatttccttatattctgctgtgaggaaaaatgggatgaaatttattgtataaatctatccgatgatggctttgaaacag

Basic information

species Vitis vinifera
transcript Vv02s0025g03150.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0025g03150.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA12G36350.1 (Glycine max), 5'ss of exon 8
TGCAGCAAATCCTTTTGGAACTCTACCTGCAATGCCTCAAATGTCGATTGGTCGCACTGGAACTGCACCTTCTATTCAATATGGGATTTCTAGCATGCCTgtaaatatgatctgtcctgaaccttggtttatttgctttagaaatttgatttggttcagtttccttttttttcattgttaatcaatgtttatgatagcagttgctactcttatgtgccatttccttatattctgctgtgaggaaaaatgggatgaaatttattgtataaatctatccgatgatggctttgaaacag
     ||||||| |||||||| || |||||| ||||||| ||||| ||||||||   ||||||| | ||||| ||||||||||| || ||||||||||||||||||    ||| || ||    ||   || |    ||    | ||| |||| || ||   |||         | | | | |||||||||     || ||||     |   ||    ||  |   |      | | |                                                           
GAATACAAATCCATTTGGAACACTTCCTGCATTGCCTCAGATGTCAATTGGTCGAGTTGGAACTACTCCTTCAATTCAATATGGAATCTCTAGCATGCCTgtaaatgc--tctttcttgg-ttttaacttttgattttgttgatttttattttgtcca---tccaaacaacaaactatca-tcaatgtttg----agtagtttgagtttcaataaagcaaatgactcctcatttcag-----------------------------------------------------------

upper sequence: Vv02s0025g03150.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA13G33910.1 (Glycine max), 5'ss of exon 8
TGCAGCAAATCCTTTTGGAACTCTACCTGCAATGCCTCAAATGTCGATTGGTCGCACTGGAACTGCACCTTCTATTCAATATGGGATTTCTAGCATGCCTgtaaatatgatctgtcctgaaccttggtttatttgctttagaaatttgatttggttcagtttccttttttttcattg-ttaatcaatgtttatgatagcagttgctactcttatgtgccatttccttatattctgctgtgaggaaaaatgggatgaaatttattgtataaatctatccgatgatggctttgaaacag
     ||||||| |||||||| || |||||  ||||||| ||||| ||||||||   ||||||  | ||||| ||||||||||| || ||||||||||||||||||    ||| || ||    |   |||   |  | | ||  |||    |||||  ||||    |     ||    ||| | ||| |||    |  |  |    ||| | | |   | |||   ||  ||  | | | |  |||  |   |||   |  ||   | |  ||  | |                   
GAATACAAATCCATTTGGAACACTTCCTGCGTTGCCTCAGATGTCAATTGGTCGAGTTGGAACCACTCCTTCAATTCAATATGGAATCTCTAGCATGCCTgtaaatgctctctctcttggttttaacttttgattttgttgatttttatcctggttttgtttaaactcaagacagaaattatttaatattt----tgtccatccaaactatca-gcaacgtttgagtagtttgagtt-tcaataaagcta--atggcttcaatatgacacctcatttcag-----------------