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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTTGGGTGGCTTTGTCAATCCTCATTGGCGGTCTTCTGTTGGATGTGCTGATATCAATTGTTCTTGGTGTCTCTGCATTGCCTGTGAACATCATCATTGgtacttattttatacccatttggcacctgtttatctgaaaatacgaccttccaatattccaagttcttggtgggcattggaacag

Basic information

species Vitis vinifera
transcript Vv02s0025g03030.t01
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351021798|gb|FQ437183.1|FQ437183
EST:     GATATCAATTGTTCTTGGTGTCTCTGCATTGCCTGTGAACATCATCATTG                         GTGTTAATTGTCGTCCTTGGACTTGGAACTGCAATACGGCTTGCCCTGGAA
genomic: GATATCAATTGTTCTTGGTGTCTCTGCATTGCCTGTGAACATCATCATTGgtacttattt ... attggaacagGTGTTA-TTGTCGTCCTTGGACTTGGAACTGCAATACGGCTTGCCCTGGAA
EST: gi|110362211|gb|EC925728.1|EC925728
EST:     GATATCAATTGTTCTTGGTGTCTCTGCATTGCCTGTGAACATCATCATTG                         GTGTTATTGTCGTCCTTGGACTTGGAACTGCAATACGGCTTGCCCTGGAAT
genomic: GATATCAATTGTTCTTGGTGTCTCTGCATTGCCTGTGAACATCATCATTGgtacttattt ... attggaacagGTGTTATTGTCGTCCTTGGACTTGGAACTGCAATACGGCTTGCCCTGGAAT
EST: gi|34548802|gb|CF517034.1|CF517034
EST:     GATATCAATTGTTCTTGGTGTCTCTGCATTGCCTGTGAACATCACCATTG                         GTGTTATTGTCGTCCTTGGACTTGGAACTGCAATACGGCTTGCCCTGGAAT
genomic: GATATCAATTGTTCTTGGTGTCTCTGCATTGCCTGTGAACATCATCATTGgtacttattt ... attggaacagGTGTTATTGTCGTCCTTGGACTTGGAACTGCAATACGGCTTGCCCTGGAAT
EST: gi|110718208|gb|EE094777.1|EE094777
EST:     GATATCAATTGTTCTTGGTGTCTCTGCATTGCCTGTGAACATCATCATTG                         GTGTTATTGTCATCCTTGGACTTGGAACTGCAATACGGCTTGGCCTGGGAA
genomic: GATATCAATTGTTCTTGGTGTCTCTGCATTGCCTGTGAACATCATCATTGgtacttattt ... attggaacagGTGTTATTGTCGTCCTTGGACTTGGAACTGCAATACGGCTTGCCCTGG-AA