Sequence
atgc intronic sequence ATGC exonic sequenceAATGAAGATGAACGCGAGATGTGTGCAAGAACAATTTACTGTACAAATATTGATAAGAAGgtactttttatgtttctttatattgaatgtgctccggtgtaggactaggaaacactttttcttttcaaatcaatgttgtatttgtttgtttaatgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv02s0025g02740.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: LOC_Os08g02330.1 (Oryza sativa), 5'ss of exon 6
AATGAAGATGAACGCGAGATGTGTGCAAGAACAATTTACTGTACAAATATTGATAAGAAGgtactttttatgtttctttatattgaatgtgctccggtgtaggactaggaaacactttttcttttcaaatcaatgttgtatttg-tttgtttaatgcag
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TCCGATGATGAGCGTGAGATGTGTGCAAGGACTATTTACTGCACAAACATTGACAAGAAGgtatgctaca-atttgcttgtactc--tgtttttcgttat---------------cctttatgctcatgtttctttggcatttgatgcatttgatacag
upper sequence: Vv02s0025g02740.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G014573_T01 (Zea mays), 5'ss of exon 4
AATGAAGATGAACGCGAGATGTGTGCAAGAACAATTTACTGTACAAATATTGATAAGAAGgtactttttatgtttctttatattgaatgtgctccggtgtaggactaggaaacactttttcttttcaaatcaatgttgtatttgtttgtttaatgcag
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CCTGACGATGAACGTGAAATGTGTGCAAGGACAATCTACTGCACAAACATTGACAAGAAGgt--ttggtacctgcactcatgct-actaccattaggtattc-attatgtcatggttctatttt---aatacacgcag--------------------
upper sequence: Vv02s0025g02740.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT4G10610.1 (Arabidopsis thaliana), 5'ss of exon 6
AATGAAGATGAACGCGAGATGTGTGCAAGAACAATTTACTGTACAAATATTGATAAGAAGgtactttttatgtttctttatattgaatgtgctccggtgtaggactaggaaacactttttcttttcaaatcaatgttgtatttgtttgtttaatgcag
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ACTGAAGATGAGCGTGAGATGTGTGCAAGAACTATCTACTGCACTAACATTGACAAGAAGgtgactctcac--tcgaataaattggtt-tcctttgccaaactattctgaaac--ttaatgttgctaactt--tgcttagtttcacttttcaacag--
upper sequence: Vv02s0025g02740.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT1G32790.2 (Arabidopsis thaliana), 5'ss of exon 6
AATGAAGATGAACGCGAGATGTGTGCAAGAACAATTTACTGTACAAATATTGATAAGAAGgtactttttatgtttctttatattgaatgtgctccggtgtaggactaggaaacactttttcttttcaaatcaatgttgtatttgtttgtttaatgcag
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ACTGAAGATGAGCGTGAGATGTGTGCAAGAACTATCTACTGTACTAACATAGACAAGAAGgtgactctcttgaatcatttctcttaacttaacc-------gtacttgatgaagtatctccctttcacacttgtgtataaattgcttatag-------
upper sequence: Vv02s0025g02740.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: PP1S62_224V6.1 (Physcomitrella patens), 5'ss of exon 6
AATGAAGATGAACGCGAGATGTGTGCAAGAACAATTTACTGTACAAATATTGATAAGAAGgtactttttatgtttctttatattgaatgtgctccggtgtaggactagga--aacactttttcttttcaaatcaatgttgtat-ttgtttgtttaatgcag
||||||||| || || ||||||||| | || || ||||||||||||||||| |||||||| | | | | || ||| || | || | || || | | |||| || | || || ||| | | | | |
TCTGAAGATGAGCGTGAAATGTGTGCACGGACCATCTACTGTACAAATATTGACAAGAAGgtgaagtggagtgaaatagaatttcgttgttctatgctg-acgatgagatccatccgttttactgcctgcttttttgcgataagttgctcttctctttgtg
upper sequence: Vv02s0025g02740.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: PP1S196_50V6.1 (Physcomitrella patens), 5'ss of exon 7
AATGAAGATGAACGCGAGATGTGTGCAAGAACAATTTACTGTACAAATATTGATAAGAAGgtac----------------tttttatgtttctttatattgaatgtgctccggtgtaggactaggaaacactttttcttttcaaatcaatgttgtatttgtttgtttaatgcag-----------------------------------------------------------------------------------------
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TCTGAAGACGAGCGTGAAATGTGTGCACGTACCATCTACTGTACAAATATTGATAAGAAGgtgaagtggagtgaaatagactttcattcttctaggctgccaattagccctgttcatttactgtctaa----tctgttgtgaaaagttatggcatggttgtgtattcgttgtgccatggttcacgaggtggtgggaagttttcatgctagtaccacattgtaatgtatggccggggctctgagcgagcagtgacttgatgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|34416313|gb|CF415067.1|CF415067EST: AACGCGAGATGTGTGCAAGAACAATTTACTGTACAAATATTGATAAGAAG GTCTCTCAAGCTGATGTTAAACTCTTTTTTGAATCGGTCTGTGGAGAG
genomic: AACGCGAGATGTGTGCAAGAACAATTTACTGTACAAATATTGATAAGAAGgtacttttta ... tttaatgcagGTCTCTCAAGCTGATGTTAAACTCTTTTTTGAATCGGTCTGTGGAGAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AATGAAGATGAACGCGAGATGTGTGCAAGAACAATTTACTGTACAAATATTGATAAGAAGgtactttttatgtttctttatattgaatgtgctccggtgtaggactaggaaacactttttcttttcaaatcaatgttgtatttgtttgtttaatgcag
- - - - - - - GAGATG
- - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG