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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGGCATCACAATCTATTTTCTCTACACTGCTGAGCTCTCTTTTTCGAGCACCAATGTCCTTTTATGACTCAACACCTCTGGGAAGGATACTCAGTCGGgtaagatgcttaaaataaatgcctattgcaaagaacagaagacttatttttttattgcctttttgcag

Basic information

species Vitis vinifera
transcript Vv02s0025g00950.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0025g00950.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G111903_T02 (Zea mays), 5'ss of exon 6
TGAGGCATCACAATCTATTTTCTCTACACTGCTGAGCTCTCTTTTTCGAGCACCAATGTCCTTTTATGACTCAACACCTCTGGGAAGGATACTCAGTCGGgtaag-atgcttaaaataaatgccta-----------ttgcaaagaacagaagacttatttttttattgcctttttgcag--------------------
  || |||||  |||  | || |||    | || | |||  | || || |||||||||||||||||||| || || ||||| ||||| ||||| || |||||||| || ||||||| ||||   ||            |  |  ||  ||  |   |  || |   |||||                             
CAAGACATCAAGATCCTTATTTTCTCAGTTACTAAACTCATTATTCCGTGCACCAATGTCCTTTTATGATTCTACCCCTCTTGGAAGAATACTTAGCCGGgtaaggattcttaaaacaaattgttaatctccctgagatatattgagtagtgggggtggttgtcacttgccacccaaagttcaacttgcacatggtacat

upper sequence: Vv02s0025g00950.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AC206266.3_FGT001 (Zea mays), 5'ss of exon 1
TGAGGCATCACAATCTATTTTCTCTACACTGCTGAGCTCTCTTTTTCGAGCACCAATGTCCTTTTATGACTCAACACCTCTGGGAAGGATACTCAGTCGGgtaag-atgcttaaaataaatgccta-----------ttgcaaagaacagaagacttatttttttattgcctttttgcag--------------------
  || |||||  |||  | || ||||   | || | |||  | || || |||||||||||||||||||| || || ||||| ||||| ||||| || |||||||| || ||||||| ||||   ||            |  |  ||  ||  |   |  || |   |||||                             
CAAGACATCAAGATCCTTATTTTCTAAGTTACTCAACTCATTATTCCGTGCACCAATGTCCTTTTATGATTCTACCCCTCTTGGAAGAATACTTAGCCGGgtaaggattcttaaaacaaattgttaatctccctgagatatattgagtagtgggggtggttgtcacttgccacccaaagttcaacttgcacatggtacat

upper sequence: Vv02s0025g00950.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AC234203.1_FGT004 (Zea mays), 5'ss of exon 4
-----------------------------------------------------TGAGGCATCACAATCTATTTTCTCTACACTGCTGAGCTCTCTT---------TTTCGAGCACCAATGT---CCTTTTATGACTCAACACCTCTGGGAAGGATACTC----------AGTCGGgtaagatgcttaaaataa-----atgcctattgcaaagaacagaagacttatttttttattgcctttttgcag-------------------------------
                                                     | |||   |  || | | ||  || | |   ||||| | | ||           | |     |||  |   |||  |||   | |   |   ||  || ||  | |          | |||      ||   |||| ||      ||    | |       ||  |||   | ||||    |||  | ||| |                                 
TGCGCCAATGTCCTTTTTTGATTCTACCCCTCTTGGAAGGATACTTAGCCGGGTAAGGATACTTAAACAAATTGTTC-ATATCCCTGAGATATATTGGGTGgtgagattggttttcaacttgcacctcctatatattagttctattgtcaacgaccccccccccccagcaatcgaagtgaatctctaaactactagacatataaaatatgctagaccaaagttctgttttgcatttggatatttcctattgatggatgaacttgcatttttttatgcag