1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GGAATGGTTTGGCTTTCATAGAATTCTACCTCGATGATCGTAGTCCAATGTCTGAAACCTACACAGACAATCAGGAAGCTCCATTGCAGCCTGTGACTAAgtaatttcttactcctataatatagaaaaatacaatttccctgactgctgaaagaattattattattagtcttcaaatattcttttactgctcagctatc...
species | Vitis vinifera |
transcript | Vv02s0012g02570.t01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TCTGAAACCTACACAGACAATCAGGAAGCTCCATTGCAGCCTGTGACTAA ATACCAACTTATAAGGGTAAATGGCAAGGGAATGAGCGAGGGTTGCAAGTGEST: gi|34549495|gb|CF517727.1|CF517727
genomic: TCTGAAACCTACACAGACAATCAGGAAGCTCCATTGCAGCCTGTGACTAAgtaatttctt ... gttttgctagATACCAACTTATAAGGGTAAATGGCAAGGGAATGAGCGAGGGTTGCAAGTG
EST: AGACAATCAGGAAGCTCCATTGCAGCCTGTGACTAA ATACCAACTTATAAGGGTAAATGGCAAGGGAATGAGCGAGGGTTGCAAGTGEST: gi|110688691|gb|EE067531.1|EE067531
genomic: AGACAATCAGGAAGCTCCATTGCAGCCTGTGACTAAgtaatttctt ... gttttgctagATACCAACTTATAAGGGTAAATGGCAAGGGAATGAGCGAGGGTTGCAAGTG
EST: TCTGAAACCTACACAGACAATCAGGAAGCTCCATTGCAGCCTGTGACTAA ATACCAACTTATAAGGGTAAATGGCAAGGGAATGAGCGAGGGTTGCAAGTGEST: gi|110691075|gb|EE068761.1|EE068761
genomic: TCTGAAACCTACACAGACAATCAGGAAGCTCCATTGCAGCCTGTGACTAAgtaatttctt ... gttttgctagATACCAACTTATAAGGGTAAATGGCAAGGGAATGAGCGAGGGTTGCAAGTG
EST: CTGAAACCTACACAGACAATCAGGAAGCTCCATTGCAGCCTGTGACTAA ATACCAACTTATAAGGGTAAATGGCAAGGGAATGAGCGAGGGTTGCAAGTG
genomic: CTGAAACCTACACAGACAATCAGGAAGCTCCATTGCAGCCTGTGACTAAgtaatttctt ... gttttgctagATACCAACTTATAAGGGTAAATGGCAAGGGAATGAGCGAGGGTTGCAAGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAATGGTTTGGCTTTCATAGAATTCTACCTCGATGATCGTAGTCCAATGTCTGAAACCTACACAGACAATCAGGAAGCTCCATTGCAGCCTGTGACTAAgtaatttcttactcctataatatagaaaaatacaatttccctgactgctgaaagaattattattattagtcttcaaatattcttttactgctcagctatc
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