1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AGTGAAAGGACTGCCCATACAAGAAGTCATTCATGATATACTAAAAGGAAATTGGGACCATGAAAGGACTAAATTTTCCTTGCCACCGTTGATGACTCTTgtaagtatgtagatatcatcattcattgctgcttacatgtggatatgcatttatagtatgacatttgtaactattgtgagggtgaaaagctttattaata...
species | Vitis vinifera |
transcript | Vv02s0012g02530.t01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: ATTGGGACCATGAAAGGACTAAA-TTTCCTTGCCACCGTTGATGACTCTT TTGCTAGGAGAACCAGGCGCTGGAGGTTCATCAACACCATCAATGGTAGGTEST: gi|30254524|gb|CB971269.1|CB971269
genomic: ATTGGGACCATGAAAGGACTAAATTTTCCTTGCCACCGTTGATGACTCTTgtaagtatgt ... gatgtggtagTTGCTAGGAGAACCAGGCGCTGGAGGTTCATCAACACCATCAATGGTAGGT
EST: ATTGGGACCATGAAAGGACTAAATTTTCCTTGCCACCGTTGATGACTCTT TTGCTAGGAGAACCAGGCGCTGGAGGTTCATCAACACCATCAATGGTAGGTEST: gi|110707464|gb|EE083889.1|EE083889
genomic: ATTGGGACCATGAAAGGACTAAATTTTCCTTGCCACCGTTGATGACTCTTgtaagtatgt ... gatgtggtagTTGCTAGGAGAACCAGGCGCTGGAGGTTCATCAACACCATCAATGGTAGGT
EST: TTGGGACCATGAAAGGACTAAATTTTCCTTGGCCAC-GTTGATGACTCTT TTGCTAAGAAAAC-AGGCGCTGGAAGTTCATCAACACCATCAATGGTAAGT
genomic: TTGGGACCATGAAAGGACTAAATTTTCCTTG-CCACCGTTGATGACTCTTgtaagtatgt ... gatgtggtagTTGCTAGGAGAACCAGGCGCTGGAGGTTCATCAACACCATCAATGGTAGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTGAAAGGACTGCCCATACAAGAAGTCATTCATGATATACTAAAAGGAAATTGGGACCATGAAAGGACTAAATTTTCCTTGCCACCGTTGATGACTCTTgtaagtatgtagatatcatcattcattgctgcttacatgtggatatgcatttatagtatgacatttgtaactattgtgagggtgaaaagctttattaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgaaaa