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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATTGATAGCTTCAATGACAATCTCCAACCTTCCGTGCCTAGATACAGGAGACGACCCTCTGGCTGCATTATTCAAGATATGCCAAATGGATACTCGAGGgtgtgttctactgtccctttttgtatacttagatcagtatgaagacattcaattttgttggttttaatcttcttcgttttcttccgttaaaacaaacaccataaatgctaaattgagggctgcagaacagatagaacaataactactcaaatcctttctcatggtgggcgttttttttttttctttctcaatacag

Basic information

species Vitis vinifera
transcript Vv02s0012g02030.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0012g02030.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA01G01850.1 (Glycine max), 5'ss of exon 7
CATTGATAGCTTCAATGACAATCTCCAACCTTCCGTGCCTAGATACAGGAGACGACCCTCTGGCTGCATTATTCAAGATATGCCAAATGGATACTCGAGGgtgtgttctactgtccctttttgtatacttagatcagtatgaagacatt--caattttgttggttttaatcttcttcgttttcttccgttaaaacaaacaccataaatgctaaattgagggctgcagaacagatagaacaataactactcaaatcctttctcatggtgggcgttttttttttttctttctcaatacag
  ||||||||||  |  | ||| | || |||||    ||||||||| | ||  |  ||||||||||| |||||||||||||||||||||| || || |||||  || ||| |       | | | || || | |  || |    |  ||  |||  ||| || || ||||  | ||| ||| |  |  ||             ||||||   |||| |    |   |      | | || | |  |    ||||  |                                         
TGTTGATAGCTTTCACCAAAATTTTCACCCTTCTTACCCTAGATACTGCAGGAGGTCCTCTGGCTGCGTTATTCAAGATATGCCAAATGGGTATTCAAGGgtaagtcctatttctgaagtatttttaatttgttacgtgttccaatttttacaaacttggtgcttctaatggt-ttcatttccaacattttc------tggtgtaaatgtctaatttaatcgttttgttt---tgggactaca--tgtgtaaattgtag---------------------------------------

upper sequence: Vv02s0012g02030.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA09G34070.1 (Glycine max), 5'ss of exon 7
CATTGATAGCTTCAATGACAATCTCCAACCTTCCGTGCCTAGATACAGGAGACGACCCTCTGGCTGCATTATTCAAGATATGCCAAATGGATACTCGAGGgtgtgttctactgtccctttttgtatacttagatcagtatgaagacattcaattttgttggttttaat--cttcttcgttttcttccgttaaaacaaacaccataaatgctaaattgagggctgcagaacagatagaacaataactactcaaatcctttctcatggtgggcgttttttttttttctttctcaatacag
  ||||||||||  |  | ||| | || |||||    ||||||||| | ||  |  ||||||||||| | |||||||||||||||||||| || || |||||   | ||| | |||    |  | |   |  ||  ||   ||    | |||  ||| || || ||||   ||| |      | |   ||     |     |  |  |  |   ||      || |  | |  |  ||   ||                                                       
TGTTGATAGCTTTCACCAAAATTTTCACCCTTCTTATCCTAGATACTGCAGGAGGTCCTCTGGCTGCGTGATTCAAGATATGCCAAATGGGTATTCAAGGgtaattcctattttccaaagtattgt-tatgtatgtgttcaaaattttacaagcttggtgcttctaatgatttcatttccaacattttttggcgtacgtgtctaatttaatcgttttttttttggactatatgtgtaaatgtag------------------------------------------------------