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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCCTACTTATGTGGTTGCACCAGTTTTGCAATCTCGCTCCGGTCGTGCGGATCTAAAAAAGCTCTTTGCAGgtttaatccttgttcctcgacttattaatctgtgaatagcttcatggtgttacttatgtttttggggtggtggatatttttgataaatgaatagtgaataccatgggtccttcacccttgtctatttctgttgaacattgtgcag

Basic information

species Vitis vinifera
transcript Vv02s0012g01220.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0012g01220.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA01G40650.1 (Glycine max), 5'ss of exon 7
ATCCTACTTATGTGGTTGCACCAGTTTTGCAATCTCGCTCCGGTCGTGCGGATCTAAAAAAGCTCTTTGCAGgtttaatccttgttcctcgacttatt--aatctgtgaatagcttcatggtgttacttatgtttttggggtggtggat-atttttgataaatgaatagtgaataccatgggtccttcacccttgtctatttctgttgaacattgtgcag
||||||||||||| |||||||| ||||| ||||||||||| |||||    ||| | |||||||| |||| |||||  || ||| |  |    | || |   || |  ||||   ||||   | || ||||| |||   |  |  | ||  | || | ||   | |    |  ||                                              
ATCCTACTTATGTTGTTGCACCTGTTTTACAATCTCGCTCTGGTCGCCAAGATTTGAAAAAGCTATTTGAAGgttcgattcttttctcctcccatacttggatattagaatcaattcaca-tctttcttat-tttcaagcattctagacgagttataattcttcatctatagat----------------------------------------------

upper sequence: Vv02s0012g01220.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA01G40650.2 (Glycine max), 5'ss of exon 6
----------------------------ATCCTACTTATGTGGTTGCACCAGTTTTGCAATCTCGCTCCGGTCGTGCGGATCTAAAAAAGCTCTTTGCAGgtttaatccttgttcctcgacttatt--aatctgtgaatagcttcatggtgttacttatgtttttggggtggtggat-atttttgataaatgaatagtgaataccatgggtccttcacccttgtctatttctgttgaacattgtgcag
                            ||||||||||||| |||||||| ||||| ||||||||||| |||||    ||| | |||||||| |||| |||||  || ||| |  |    | || |   || |  ||||   ||||   | || ||||| |||   |  |  | ||  | || | ||   | |    |  ||                                              
TGGTTCTGTCTTTTTCTCTCTCTTTCAGATCCTACTTATGTTGTTGCACCTGTTTTACAATCTCGCTCTGGTCGCCAAGATTTGAAAAAGCTATTTGAAGgttcgattcttttctcctcccatacttggatattagaatcaattcaca-tctttcttat-tttcaagcattctagacgagttataattcttcatctatagat----------------------------------------------

upper sequence: Vv02s0012g01220.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA11G04660.2 (Glycine max), 5'ss of exon 7
ATCCTACTTATGTGGTTGCACCAGTTTTGCAATCTCGCTCCGGTCGTGCGGATCTAAAAAAGCTCTTTGCAGgtttaatccttgttcctcgacttattaatctgtgaatagcttcatggtgttacttatgtttttggggtggtggatatttttgataaatgaatagtgaata-ccatgggtccttcacccttgtctatttctgttgaacattgtgcag
||||||||||||| |||||||| ||||| ||||||||||| |||||    ||| | |||||||| |||| |||||  ||  || | ||    | || |      || |||     ||    | || | | | ||   | |    |  ||| | ||  | | |  | |    | | || | |                                     
ATCCTACTTATGTTGTTGCACCTGTTTTACAATCTCGCTCTGGTCGCCAAGATTTGAAAAAGCTATTTGAAGgttcgattattttcccctcccatact------tggatattagaatcaattcacatctttctt---gtttacagtcattctagacgagttataattcttcatctatagat-------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|352769120|gb|FQ471068.1|FQ471068
EST:     AGTTTTGCAATCTCGCTCCGGTCGTGCGGATCTAAAAAAGCTCTTTGCAG                         CCTGGTATGAAAGAAGGCAAATGAAAAAGATCTACTCTCCACTTCTGGAAG
genomic: AGTTTTGCAATCTCGCTCCGGTCGTGCGGATCTAAAAAAGCTCTTTGCAGgtttaatcct ... cattgtgcagCCTGGTATGAAAGAAGGCAAATGAAAAAGATCTACTCTCCACTTCTGGAAG
EST: gi|352776642|gb|FQ465440.1|FQ465440
EST:     GTTTTGCAATCTCGCTCCGGTCGTGCGGATCTNNNNNNNGCTCTTTGCAG                         CCTGGTATGAAAGAAGGCAAATGAAAAAGATCTACTCTCCACTTCTGGAAG
genomic: GTTTTGCAATCTCGCTCCGGTCGTGCGGATCT-AAAAAAGCTCTTTGCAGgtttaatcct ... cattgtgcagCCTGGTATGAAAGAAGGCAAATGAAAAAGATCTACTCTCCACTTCTGGAAG
EST: gi|352781173|gb|FQ466486.1|FQ466486
EST:     GTTTTGCAATCTCGCTCCGGTCGTGCGGATCTNNNNNNNGCTCTTTGCAG                         CCTGGTATGAAAGAAGGCAAATGAAAAAGATTTACTCTCCACTTCTGGAAG
genomic: GTTTTGCAATCTCGCTCCGGTCGTGCGGATCT-AAAAAAGCTCTTTGCAGgtttaatcct ... cattgtgcagCCTGGTATGAAAGAAGGCAAATGAAAAAGATCTACTCTCCACTTCTGGAAG
EST: gi|156737157|gb|EV241278.1|EV241278
EST:     AGTTTTGCAATCTCGCTCCGGTCGTGCGGATCTAAAAAAGCTCTTTGCAG                         CCTGGTATGAAAGAAGGCAAATGAAAAAGATCTACTCTCCACTTCTGGAAG
genomic: AGTTTTGCAATCTCGCTCCGGTCGTGCGGATCTAAAAAAGCTCTTTGCAGgtttaatcct ... cattgtgcagCCTGGTATGAAAGAAGGCAAATGAAAAAGATCTACTCTCCACTTCTGGAAG
EST: gi|110363320|gb|EC926898.1|EC926898
EST:     AGTTTTGCAATCTCGCTCCGGTCGTGCGGATCTAAAAAAGCTCTTTGCAG                         CCTGGTATGAAAGAAGGCAAATGAAAAAGATCTACTCTCCACTTCTTGAAG
genomic: AGTTTTGCAATCTCGCTCCGGTCGTGCGGATCTAAAAAAGCTCTTTGCAGgtttaatcct ... cattgtgcagCCTGGTATGAAAGAAGGCAAATGAAAAAGATCTACTCTCCACTTCTGGAAG
EST: gi|349828983|gb|FQ419515.1|FQ419515
EST:     AGTTTTGCAATCTCGCTCCGGTCGTGCGGATCTAAAAAAGCTCTTTGCAG                         CCTGGTATGAAAGAAGGCAAATGAAAAAGATCTACTCTCCACTTCTTGAAG
genomic: AGTTTTGCAATCTCGCTCCGGTCGTGCGGATCTAAAAAAGCTCTTTGCAGgtttaatcct ... cattgtgcagCCTGGTATGAAAGAAGGCAAATGAAAAAGATCTACTCTCCACTTCTGGAAG
EST: gi|110380859|gb|EC946157.1|EC946157
EST:     AGTTTTGCAATCTCGCTCCGGTCGTGCGGATCTAAAAAAGCTCTTTGCAG                         CCTGGTATGAAAGAAGGCAAATGAAAAAGATCTACTCTCCACTTCTTGAAG
genomic: AGTTTTGCAATCTCGCTCCGGTCGTGCGGATCTAAAAAAGCTCTTTGCAGgtttaatcct ... cattgtgcagCCTGGTATGAAAGAAGGCAAATGAAAAAGATCTACTCTCCACTTCTGGAAG
EST: gi|352769544|gb|FQ468472.1|FQ468472
EST:     AGTTTTGCAATCTCGCTCCGGTCGTGCGGATCTAAAAAAGCTCTTTGCAG                         CCTGGTATGAAAGAAGGCAAATGAAAAAGATCTACTCTCCACTTCTGGAAG
genomic: AGTTTTGCAATCTCGCTCCGGTCGTGCGGATCTAAAAAAGCTCTTTGCAGgtttaatcct ... cattgtgcagCCTGGTATGAAAGAAGGCAAATGAAAAAGATCTACTCTCCACTTCTGGAAG