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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTGAACTTGCTTCAAAATGTCTTCAGTCTGAGGCCAGGGATCGACCTGATACTAATTTTCTTCTTACAGCAGTAGCACCCCTTCAAAAGCAGAAAGAGgtgaaattttagtgaatctgtaacgttggaattacagttcatattagtttttgatgtacattaaatattctggtttgtgctgttatgtaatccttcatttgttcctaatatgctccagttattctctttggtattcag

Basic information

species Vitis vinifera
transcript Vv02s0012g01140.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0012g01140.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA05G06140.1 (Glycine max), 5'ss of exon 7
GGTTGAACTTGCTTCAAAATGTCTTCAGTCTGAGGCCAGGGATCGACCTGATACTAATTTTCTTCTTACAGCAGTAGCACCCCTTCAAAAGCAGAAAGAGgt--gaaattttagtgaatctgtaacgttggaattacagttcatattagtt----tttgatgtacatt--aaatattctggtttgtgctgttatg-taatccttcatttgttcctaatat-gctcc-----------agttattctctttggtattcag
|||||| |||||||||||||||||||||| ||||||||| || || ||||| | ||| ||||||||||| || || || || ||||||||||||||||||||   |  ||||  |  | || |||   | ||| | || || |  || | |    ||| || | ||||  |||| |  |    | || | ||| | |   |||||   |  || ||| || |||             ||||   | | ||  | | |||
GGTTGAGCTTGCTTCAAAATGTCTTCAGTTTGAGGCCAGAGAACGGCCTGAAATTAAATTTCTTCTTACTGCTGTTGCGCCTCTTCAAAAGCAGAAAGAGgttttagtttttgttttagctttaaatgttgaacttcaatttacttttgctgtacttttattttcattccaaatgtattcaactttgtttttaaggtttaccttctcattctcgtaaaatcgctgttcaccatgttgagttgcccccctttttttacag

upper sequence: Vv02s0012g01140.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA17G16420.1 (Glycine max), 5'ss of exon 7
GGTTGAACTTGCTTCAAAATGTCTTCAGTCTGAGGCCAGGGATCGACCTGATACTAATTTTCTTCTTACAGCAGTAGCACCCCTTCAAAAGCAGAAAGAGgtgaaattttagtgaat--ctgtaacgttggaattacagttcatattagtttttgatgtacattaaat--attctggtt-tgtgctgttatgtaatccttcatttgttcctaatatgctccagttattctctttggtattcag--------------------
|||||| |||||||||||||||||||||| ||||||||| || |||||||| | ||| || |||||||| || || || || ||||||| ||||||||||||    |||| ||   |   |  || ||||   || || || | ||| | | ||  | ||  |  | |  ||||    | ||| |  ||   |  ||||   ||  |||    | | ||  | |  || |   |  | || |                     
GGTTGAGCTTGCTTCAAAATGTCTTCAGTTTGAGGCCAGAGAACGACCTGAAATTAAGTTCCTTCTTACTGCCGTTGCGCCTCTTCAAAGGCAGAAAGAGgtttggtttttgtttttgctttcaatgttgacctt-caatttacatttgctgttcttttatctccattccattccaactgtgttcaatttcattttcctggtttccttctctttgt-ctaaaatctttgttcatcattttgaatttgctccctctttttacag

upper sequence: Vv02s0012g01140.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT5G46570.1 (Arabidopsis thaliana), 5'ss of exon 6
GGTTGAACTTGCTTCAAAATGTCTTCAGTCTGAGGCCAGGGATCGACCTGATACTAATTTTCTTCTTACAGCAGTAGCACCCCTTCAAAAGCAGAAAGAGgtgaaattttagtgaatctgtaacgttggaattacagttcatattagtttttgatgtacatt-aaatattctggttt--gtgctgttatgtaatccttcatttgttcctaatatgctccagttattctctttggtattcag
 ||||| |||||||||||||| ||||| || ||||| | ||||||||| ||||| || ||||||||  | ||||||||||| || ||||||||  |||||||     || |  |||||  |     || ||       |   || | |||   ||  | |||    ||| |||| ||   |  ||||   ||                                                 
AGTTGATCTTGCTTCAAAATGCCTTCAATCAGAGGCAAAGGATCGACCAGATACCAAATTTCTTCTCTCTGCAGTAGCACCACTACAAAAGCAAGAAGAGgt-----ttaaaagaatccctc---ctgaaaccgaccatatcatgaatttcatatccaaatttgtttatcctggatttgattttgttgcttag------------------------------------------------