Sequence
atgc intronic sequence ATGC exonic sequenceTGAAATGCTTCCTCTCTGGAATGCCTGATTTGAAGTTGGGTTTAAATGATAAAATTGGCCTTGAGAAAGAGTCCCAACTTAAATCCCGTCCTGCTAAAAGgtaactttttgaggcacacctatcttattcttcatagttcttttttttttttttcttttgccagttgttagctcaatatttgtgtctccttcggaaattt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv02s0012g00910.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: LOC_Os02g46510.1 (Oryza sativa), 5'ss of exon 7
TGAAATGCTTCCTCTCTGGAATGCCTGATTTGAAGTTGGGTTTAAATGATAAAATTGGCCTTGAGAAAGAGTCCCAACTTAAATCCCGTCCTGCTAAAAGgta--actttttgaggcacacctatcttattcttcatagttcttttttttttttttcttttgccagttgttagctcaatatttgtgtctccttcggaaattt------------------------------------------
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TGAAGTGCTTCCTTTCTGGAATGCCTGATCTGAAATTGGGATTAAATGACAAGATCGGGCTTGAAAAAGAAGCTCAACTCAAGTCCAGGCCTGCAAAGAGgtatcactttatcaataattagtacatgaagaaaaaaaattgagcatctggtttttctgattagtatagtttatatggtatgtacacaatctttactactttaactgaattgtctgctggtcggttctcctttttcctcaacag
upper sequence: Vv02s0012g00910.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G331032_T01 (Zea mays), 5'ss of exon 7
TGAAATGCTTCCTCTCTGGAATGCCTGATTTGAAGTTGGGTTTAAATGATAAAATTGGCCTTGAGAAAGAGTCCCAACTTAAATCCCGTCCTGCTAAAAGgtaactttttgaggcacacctatcttattcttcatagttcttttttttttttttctt--ttgccagttgttagctcaatatt-tgtgtctccttcggaaattt------
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TGAAATGCTTCCTTTCTGGAATGCCTGATCTGAAGCTGGGATTAAATGACAAGATTGGACTTGAAAAAGAGGCCCAACTAAAGTCCAGACCAGCAAAGAGgtaac---------catatcttgattattataaaaggtgaattttgccataggacatggacatcaaacatacatgttacatggtatgggccattttcacgctcaagctc
upper sequence: Vv02s0012g00910.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA11G04600.1 (Glycine max), 5'ss of exon 7
TGAAATGCTTCCTCTCTGGAATGCCTGATTTGAAGTTGGGTTTAAATGATAAAATTGGCCTTGAGAAAGAGTCCCAACTTAAATCCCGTCCTGCTAAAAGgtaactttttgaggcacacctatcttattcttcatagttcttttttttttttttcttttgccagttgttagctcaatatttgtgtctccttcggaaattt--------
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TGAAGTGCTTTCTTTCTGGAATGCCTGATTTGAAGTTGGGTTTGAATGACAAGATTGGCCTTGAGAAAGAGTCACAACTTAAATCTCGTCCTACTAAAAGgtagttttcatttggaca------tgattccttaca-ttttccttcaaatgcctttgatattcattgtcatttgaa-acttgtgtttgtcctgttacattatcataga
upper sequence: Vv02s0012g00910.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA01G40700.1 (Glycine max), 5'ss of exon 7
TGAAATGCTTCCTCTCTGGAATGCCTGATTTGAAGTTGGGTTTAAATGATAAAATTGGCCTTGAGAAAGAGTCCCAACTTAAATCCCGTCCTGCTAAAAGgtaacttt--ttgaggcacaccta-tcttattcttcatagttcttttttttttttttcttttgccagttgttagctcaatatttgtgtctccttcggaaattt
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TGAAGTGCTTTCTTTCTGGAATGCCGGATTTGAAGTTGGGTTTGAATGACAAGATTGGCCTTGAGAAAGAGTCACAACTTAAATCACGTCCTACAAAAAGgtagttttcatttggacatgcctcctcacattttccttcaaatgcctttgatattattcattgtcatttgaaactt--gtgtttgt-cctgttacattatcat
upper sequence: Vv02s0012g00910.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT5G46630.1 (Arabidopsis thaliana), 5'ss of exon 7
TGAAATGCTTCCTCTCTGGAATGCCTGATTTGAAGTTGGGTTTAAATGATAAAATTGGCCTTGAGAAAGAGTCCCAACTTAAATCCCGTCCTGCTAAAAGgtaactttttgaggcacacctatc-ttattcttcatagttcttttttttttttttcttttgccagttgttagctcaatatttgtgtctccttcggaaattt
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TGAAATGTTTCCTTTCGGGAATGCCTGATTTGAAGTTGGGGTTGAATGATAAAATTGGTCTTGAGAAGGAATCAGAAATGAAATCTCGCCCAGCTAAGAGgtatacgttgttaatacattgaacatcagtagccactgacttttctttgtgctaactgactctcgttttgtgcag--------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|29782813|gb|CB348455.2|CB348455EST: AAAATTGGCCTTGAGAAAGAGTCCCAACTTAAATCCCGTCCTGCTAAAGG TGGCAAAACCATTGAGCTTGATGATGTTACTTTCCACCAGTGCGTAAATTT
genomic: AAAATTGGCCTTGAGAAAGAGTCCCAACTTAAATCCCGTCCTGCTAAAAGgtaacttttt ... ccttttacagTGGCAAAACCATTGAGCTTGATGATGTTACTTTCCACCAGTGCGTAAATTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGAAATGCTTCCTCTCTGGAATGCCTGATTTGAAGTTGGGTTTAAATGATAAAATTGGCCTTGAGAAAGAGTCCCAACTTAAATCCCGTCCTGCTAAAAGgtaactttttgaggcacacctatcttattcttcatagttcttttttttttttttcttttgccagttgttagctcaatatttgtgtctccttcggaaattt
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggaaatt