1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
ATCAGGTCATATTAACCATAAAAGCATGACAGTACCATCAGACTGGATGTGCATCATATGTGGCTGTGTCAATTTTGCCCGGCGTACATCCTGCTTTCAGgttctgtgcttgttcttctctccttatgctatagccttccttgatactgtttcctttattctttcttggtcaagttatcagcgagttttctcgtttctgt...
species | Vitis vinifera |
transcript | Vv02s0012g00870.t01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GCATCATATGTGGCTGTGTCAATTTTGCCCGGCGTACATCCTGCTTTCAG TGTAATGAAGTCCGGACTGATGAATCTCCACCAGCAGATATAGCATCATCAEST: gi|352772792|gb|FQ473830.1|FQ473830
genomic: GCATCATATGTGGCTGTGTCAATTTTGCCCGGCGTACATCCTGCTTTCAGgttctgtgct ... cttaatgcagTGTAATGAAGTCCGGACTGATGAATCTCCACCAGCAGATATAGCATCATCA
EST: GCATCATATGTGGCTGTGTCAATTTTGCCCGGCGTACATCCTGCTTTCAG TGTAATGAAGTCCGGACTGATGAATCTCCACCAGCAGATATAGCATCATCAEST: gi|352764157|gb|FQ467727.1|FQ467727
genomic: GCATCATATGTGGCTGTGTCAATTTTGCCCGGCGTACATCCTGCTTTCAGgttctgtgct ... cttaatgcagTGTAATGAAGTCCGGACTGATGAATCTCCACCAGCAGATATAGCATCATCA
EST: GCATCATATGTGGCTGTGTCAATTTTGCCCGGCGTACATCCTGCTTTCAG TGTAATGAAGTCCGGACTGATGAATCTCCACCAGCAGATATAGCATCATCAEST: gi|28962295|gb|CB341328.1|CB341328
genomic: GCATCATATGTGGCTGTGTCAATTTTGCCCGGCGTACATCCTGCTTTCAGgttctgtgct ... cttaatgcagTGTAATGAAGTCCGGACTGATGAATCTCCACCAGCAGATATAGCATCATCA
EST: GCATCATATGTGGCTGTGTCAATTTTGCCCGGCGTACATCCTGCTTTCAG TGTAATGAAGTCCGGACTGATGAATCTCCACCAGCAGATATAGCATCATCA
genomic: GCATCATATGTGGCTGTGTCAATTTTGCCCGGCGTACATCCTGCTTTCAGgttctgtgct ... cttaatgcagTGTAATGAAGTCCGGACTGATGAATCTCCACCAGCAGATATAGCATCATCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCAGGTCATATTAACCATAAAAGCATGACAGTACCATCAGACTGGATGTGCATCATATGTGGCTGTGTCAATTTTGCCCGGCGTACATCCTGCTTTCAGgttctgtgcttgttcttctctccttatgctatagccttccttgatactgtttcctttattctttcttggtcaagttatcagcgagttttctcgtttctgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctcct