1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AAAGGATGACAAAATGGTCTCCAGTAATCCAAATACAAGTCGAGATGAACCAAAAACTGTGGAAGAACAGAAGAATGATGATGTGGCACCAATGGAACAGgtattagtttgcatattgtgtgggttcttggctgtttacttcaactttatatgttctcttactcttctgttttggataagaatgatatggccttttcttt...
species | Vitis vinifera |
transcript | Vv01s0150g00590.t01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CAAAAACTGTGGAAGAACAGAAGAATGATGATGTGGCACCAATGGAACAG GAATAGATTCTGTGTTCCCCATTTCCAGTCACTGCAAGAATGCTTGTTCCAEST: gi|110707870|gb|EE084759.1|EE084759
genomic: CAAAAACTGTGGAAGAACAGAAGAATGATGATGTGGCACCAATGGAACAGgtattagttt ... cttttttcagGAATAGATTCTGTGTTCCCCATTTCCAGTCACTGCAAGAATGCTTGTTCCA
EST: CAAAAACTGTGGAAGAACAGAAGAATGATGATGTGGCACCAATGGAACAG GAATAGATTCTGTGTTCCCCATTTCCAGTCACTGCAAGAATGCTTGTTCCAEST: gi|30297142|gb|CB973936.1|CB973936
genomic: CAAAAACTGTGGAAGAACAGAAGAATGATGATGTGGCACCAATGGAACAGgtattagttt ... cttttttcagGAATAGATTCTGTGTTCCCCATTTCCAGTCACTGCAAGAATGCTTGTTCCA
EST: CAAAAACTGTGGAAGAACAGAAGAATGATGATGTGGCACCAATGGAACAG GAATAGATTCTGTGTTCCCCATTTCCAGTCACTGCAAGAATGCTTGTTCCAEST: gi|34364384|gb|CF405969.1|CF405969
genomic: CAAAAACTGTGGAAGAACAGAAGAATGATGATGTGGCACCAATGGAACAGgtattagttt ... cttttttcagGAATAGATTCTGTGTTCCCCATTTCCAGTCACTGCAAGAATGCTTGTTCCA
EST: CAAAAACTGTGGAAGAACAGAAGAATGATGATGTGGCACCAATGGAACAG GAATAGATTCTGTGTTCCCCATTTCCAGTCACTGCAAGAATGCTTGTTCCAEST: gi|27584516|gb|CB007211.1|CB007211
genomic: CAAAAACTGTGGAAGAACAGAAGAATGATGATGTGGCACCAATGGAACAGgtattagttt ... cttttttcagGAATAGATTCTGTGTTCCCCATTTCCAGTCACTGCAAGAATGCTTGTTCCA
EST: GAATGATGATGTGGCACCAATGGAACAG GAATAGATTCTGTGTTCCCCATTTCCAGTCACTGCAAGAATGCTTGTTCCAEST: gi|110388633|gb|EC953405.1|EC953405
genomic: GAATGATGATGTGGCACCAATGGAACAGgtattagttt ... cttttttcagGAATAGATTCTGTGTTCCCCATTTCCAGTCACTGCAAGAATGCTTGTTCCA
EST: CAAAAACTGTGGAAGAACAGAAGAATGATGATGTGGCACCAATGGAACAG GAATAGATTCTGTGTTCCCCATTTCCAGTCACTGCAAGAATGCTTGTTCCAEST: gi|32246202|gb|CD712021.1|CD712021
genomic: CAAAAACTGTGGAAGAACAGAAGAATGATGATGTGGCACCAATGGAACAGgtattagttt ... cttttttcagGAATAGATTCTGTGTTCCCCATTTCCAGTCACTGCAAGAATGCTTGTTCCA
EST: GAATGATGATGTGGCACCAATGGAACAG GAATAGATTCTGTGTTCCCCATTTCCAGTCACTGCAAGAATGCTTGTTCCAEST: gi|30297080|gb|CB973874.1|CB973874
genomic: GAATGATGATGTGGCACCAATGGAACAGgtattagttt ... cttttttcagGAATAGATTCTGTGTTCCCCATTTCCAGTCACTGCAAGAATGCTTGTTCCA
EST: CAAAAACTGTGGAAGAACAGAAGAATGATGATGTGGCACCAATGGAACAG GAATAGATTCTGTGTTCCCCATTTCCAGTCACTGCAAGAATGCTTGTTCCA
genomic: CAAAAACTGTGGAAGAACAGAAGAATGATGATGTGGCACCAATGGAACAGgtattagttt ... cttttttcagGAATAGATTCTGTGTTCCCCATTTCCAGTCACTGCAAGAATGCTTGTTCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAGGATGACAAAATGGTCTCCAGTAATCCAAATACAAGTCGAGATGAACCAAAAACTGTGGAAGAACAGAAGAATGATGATGTGGCACCAATGGAACAGgtattagtttgcatattgtgtgggttcttggctgtttacttcaactttatatgttctcttactcttctgttttggataagaatgatatggccttttcttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gataaga