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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCATATTATGATATAAGAGCAGCCCGAAATGCAATGAGAGCACTCCAGAACAAACCATTGAGGCGTAGGAAGCTTGACATTCATTATTCTATTCCAAAGgtgtgatactttattttcatcctatgtagagcatgtggcatttcttgctttgattaagtaatcctcatgttagctttgtagttatcacttgttaggataa...

Basic information

species Vitis vinifera
transcript Vv01s0150g00090.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0150g00090.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: LOC_Os05g01240.3 (Oryza sativa), 5'ss of exon 5
CTCATATTATGATATAAGAGCAGCCCGAAATGCAATGAGAGCACTCCAGAACAAACCATTGAGGCGTAGGAAGCTTGACATTCATTATTCTATTCCAAAGgtgtg-atactt-tattttca-tcctatgtagagcatgtggc---atttcttgctttgattaagtaatcctcatgttagctttgtagttatcacttgttaggataa
 || |||||||| ||||||||||||| ||||||||||||||| || || | ||| ||  || |||  | ||| |||||  | || | |||| |||| ||||| || ||| |  |||    | |  |   |   |||||   |   || | |   | |   | |  |  ||   |||||  |  | | |  |    ||||       
TTCTTATTATGACATAAGAGCAGCCCAAAATGCAATGAGAGCGCTGCATAGCAAGCCTCTGGGGCTGATGAAACTTGATGTGCAATTTTCTTTTCCTAAGgtatgcataataatatcagtagttttgaattaggcatgctacctaatctatatatcttccttatcatgccatttgttacttgggcaatgttgttctgttt------

upper sequence: Vv01s0150g00090.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: LOC_Os02g31290.1 (Oryza sativa), 5'ss of exon 6
CTCATATTATGATATAAGAGCAGCCCGAAATGCAATGAGAGCACTCCAGAACAAACCATTGAGGCGTAGGAAGCTTGACATTCATTATTCTATTCCAAAGgtg------tgatactttattttcatcctatgtagagcatgtg---gcatttcttgct--ttgattaagtaatcctcatgttagctttgtagttat-cacttgttaggataa-----------------------
 || || |||||||||||  |||| |  ||||| | ||  |  || || |||||  || ||||||||||||| |||||||| |||||||| ||||| |||||         ||  |  |||  ||    |   | |     |    ||||||  || |   || |   ||  |    ||||||   || ||| ||| ||||      ||  |                       
ATCTTACTATGATATAAGGTCAGCGCTGAATGCCAAGATGGAGCTTCAAAACAAGGCACTGAGGCGTAGGAAACTTGACATACATTATTCCATTCCGAAGgtaaccatcaaatcatcaattgccacttaactgaaaatgcttatctgcattttctgttgcctgttcttgtgcttagaatgttattattctagatattcactaaaattgagcacatttgcttttctttccccacag