Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGGTTTTACTGGGATTGGAGTTGGTGCTGCTTACTATGGTCTTAAGCCTGTTGTAGAGTTCATGACATTTAATTTCTCTATGCAGgttagagtcttatcactatatactcaaattatgaaaatttctagttctgattttatttgatgttctcaaattgaacctttagctgggattggtcaaaact...

Basic information

species Vitis vinifera
transcript Vv01s0146g00310.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0146g00310.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: LOC_Os08g42410.2 (Oryza sativa), 5'ss of exon 4
GCTGGTTTTACTGGGATTGGAGTTGGTGCTGCTTACTATGGTCTTAAGCCTGTTGTAGAGTTCATGACATTTAATTTCTCTATGCAGgttagagtcttatcactatatactcaaattatgaa---aatttctagttctgattttatttgatgttctcaaattgaacctttagctgggattggtcaaaact
|||||||||||||| ||||| ||||||||||| ||  | ||||||   ||||| || ||||||||||||||||| |||||||||||||| |     | |  | | |    | || ||||       |||||    | ||  |||   |  |||| | ||   ||   ||| | |  |     | | ||  
GCTGGTTTTACTGGAATTGGTGTTGGTGCTGCCTATCAAGGTCTTCGCCCTGTGGTTGAGTTCATGACATTTAACTTCTCTATGCAGgtcaatcattcactattctcacttaaatttatatgtttgatttcagaatgtgccttttcctt-tgtttttaagcagattatttggttctgcacacttagaa--

upper sequence: Vv01s0146g00310.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: LOC_Os09g33500.1 (Oryza sativa), 5'ss of exon 6
GCTGGTTTTACTGGGATTGGAGTTGGTGCTGCTTACTATGGTCTTAAGCCTGTTGTAGAGTTCATGACATTTAATTTCTCTATGCAGgttagagtcttatcactatatactcaaattatgaaaatttctagttctgattttatttgatgttctcaaattgaacctttagctgggattggtcaaaact--
||||| |||||||| ||||  |||||||| || ||  | ||||||   ||||||||||||||||||||||| |||||||| ||||||||| |      |  | | |||    |   ||  |  ||       || | || |||| | || |  ||         |   | ||   ||  |   |  |  
GCTGGGTTTACTGGCATTGCTGTTGGTGCAGCGTATCAAGGTCTTCGACCTGTTGTAGAGTTCATGACATTCAATTTCTCAATGCAGgttggtaatgcacgaat-tatcaatatgctactatgatagtggaatcagtttatatt-gttgcttgcagcaacggattgctgttgaattttatattagtttt

upper sequence: Vv01s0146g00310.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G097226_T02 (Zea mays), 5'ss of exon 6
GCTGGTTTTACTGGGATTGGAGTTGGTGCTGCTTACTATGGTCTTAAGCCTGTTGTAGAGTTCATGACATTTAATTTCTCTATGCAGgttagagtcttatcactatatactcaaattatgaaaatttctagtt-ctgattttatttgatgttctcaaattgaacctttagctgggattggtcaaaact----
|||||||||||||| ||||| |||||||| |||||  ||||||||  |||| || ||||||| ||||||||||||||||| |||||||| ||| | | ||     ||    |||||| | ||  ||| || || |   | |||    || | |    |        |   ||   || ||||    ||    
GCTGGTTTTACTGGCATTGGTGTTGGTGCAGCTTATCATGGTCTTCGGCCTATTATAGAGTTTATGACATTTAATTTCTCGATGCAGgtcagattttgatattggtaa---caaatt-taaagttttttacttgcctttcttaacgtatatccctggacgtctgagtgtactataat-ggtccctgcttgct

upper sequence: Vv01s0146g00310.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G043198_T02 (Zea mays), 5'ss of exon 6
GCTGGTTTTACTGGGATTGGAGTTGGTGCTGCTTACTATGGTCTTAAGCCTGTTGTAGAGTTCATGACATTTAATTTCTCTATGCAGgttaga-gtcttatcactatatactcaaattatgaaaatt-tctagttctgattttatttgatgttctcaaattgaacctt--tagctgggattggtcaaaact
|| || || ||||| ||||| |||||||| |||||| ||||||||   ||| |||||||||||||||||||||| || || |||||||| ||| || | |||| |   |   ||||| |  | | |  |  | || | |   |||||| |    |  | |||  | ||  |   ||| ||   ||      
GCGGGCTTCACTGGCATTGGTGTTGGTGCCGCTTACCATGGTCTTCGACCTATTGTAGAGTTCATGACATTTAACTTTTCGATGCAGgtcagatgtttgatcaat---tctgcaaatcaccatactaattcaattattacaatatttgcttgctttgatttgttctttactcattggcatatctcttggt-

upper sequence: Vv01s0146g00310.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G043198_T03 (Zea mays), 5'ss of exon 6
GCTGGTTTTACTGGGATTGGAGTTGGTGCTGCTTACTATGGTCTTAAGCCTGTTGTAGAGTTCATGACATTTAATTTCTCTATGCAGgttaga-gtcttatcactatatactcaaattatgaaaatt-tctagttctgattttatttgatgttctcaaattgaacctt--tagctgggattggtcaaaact
   || || ||||| ||||| |||||||| |||||| ||||||||   ||| |||||||||||||||||||||| || || |||||||| ||| || | |||| |   |   ||||| |  | | |  |  | || | |   |||||| |    |  | |||  | ||  |   ||| ||   ||      
---GGCTTCACTGGCATTGGTGTTGGTGCCGCTTACCATGGTCTTCGACCTATTGTAGAGTTCATGACATTTAACTTTTCGATGCAGgtcagatgtttgatcaat---tctgcaaatcaccatactaattcaattattacaatatttgcttgctttgatttgttctttactcattggcatatctcttggt-

upper sequence: Vv01s0146g00310.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT5G50850.1 (Arabidopsis thaliana), 5'ss of exon 7
GCTGGTTTTACTGGGATTGGAGTTGGTGCTGCTTACTATGGTCTTAAGCCTGTTGTAGAGTTCATGACATTTAATTTCTCTATGCAGgttagagtc--ttatcactatatactcaaattatgaaaatttctagttctgattttatttgatgttctcaaattgaacctttagctgggattggtcaaaact
||||| |||||||| ||||||||||||||||| ||   |||  | ||||| |||||||| || ||||| ||||| ||||||||||||||||| ||   || |   ||||| ||   | ||  | | |||     | |  ||| | |||||  |    |||||   | ||| ||  |||    ||     
GCTGGATTTACTGGAATTGGAGTTGGTGCTGCCTATGCTGGCTTAAAGCCCGTTGTAGAATTTATGACGTTTAACTTCTCTATGCAGgttagcgttggtttttgttatattctttgaatactacattttgcctctttc-tttgacttgattatgcataattgttgcgtta-ctcagatcatgcactctg

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351043256|gb|FQ443977.1|FQ443977
EST:     ATGGTCTTAAGCCTGTTGTAGAGTTCATGACATTTAATTTCTCTATGCAG                         GCAATTGACCACATCATTAATTCTGCCGCAAAATCAAACTACATGTCCGCT
genomic: ATGGTCTTAAGCCTGTTGTAGAGTTCATGACATTTAATTTCTCTATGCAGgttagagtct ... ttttttgcagGCAATTGACCACATCATTAATTCTGCTGCAAAATCAAACTACATGTCCGCT
EST: gi|351034261|gb|FQ448058.1|FQ448058
EST:     ATGGTCTTAAGCCTGTTGTAGAGTTCATGACATTTAATTTCTCTATGCAG                         GCAATTGACCACATCATTAATTCTGCCGCAAAATCAAACTACATGTCCGCT
genomic: ATGGTCTTAAGCCTGTTGTAGAGTTCATGACATTTAATTTCTCTATGCAGgttagagtct ... ttttttgcagGCAATTGACCACATCATTAATTCTGCTGCAAAATCAAACTACATGTCCGCT
EST: gi|351034494|gb|FQ448170.1|FQ448170
EST:     ATGGTCTTAAGCCTGTTGTAGAGTTTATGACATTTAATTTCTCTATGCAG                         GCAATTGACCACATCATTAATTCTGCCGCAAAATCAAACTACATGTCCGCT
genomic: ATGGTCTTAAGCCTGTTGTAGAGTTCATGACATTTAATTTCTCTATGCAGgttagagtct ... ttttttgcagGCAATTGACCACATCATTAATTCTGCTGCAAAATCAAACTACATGTCCGCT
EST: gi|351023552|gb|FQ432935.1|FQ432935
EST:     ATGGTCTTAAGCCTGTTGTAGAGTTCATGACATTTAATTTCTCTATGCAG                         GCAATTGACCACATCATTAATTCTGCCGCAAAATCAAACTACATGTCCGCT
genomic: ATGGTCTTAAGCCTGTTGTAGAGTTCATGACATTTAATTTCTCTATGCAGgttagagtct ... ttttttgcagGCAATTGACCACATCATTAATTCTGCTGCAAAATCAAACTACATGTCCGCT
EST: gi|349817767|gb|FQ407756.1|FQ407756
EST:     ATGGTCTTAAGCCTGTTGTAGAGTTCATGACATTTAATTTCTCTATGCAG                         GCAATTGACCACATCATTAATTCTGCCGCAAAATCAAACTACATGTCCGCT
genomic: ATGGTCTTAAGCCTGTTGTAGAGTTCATGACATTTAATTTCTCTATGCAGgttagagtct ... ttttttgcagGCAATTGACCACATCATTAATTCTGCTGCAAAATCAAACTACATGTCCGCT
EST: gi|351014802|gb|FQ438002.1|FQ438002
EST:     ATGGTCTTAAGCCTGTTGTAGAGTTCATGACATTTAATTTCTCTATGCAG                         GCAATTGACCACATCATTAATTCTGCCGCAAAATCAAACTACATGTCCGCT
genomic: ATGGTCTTAAGCCTGTTGTAGAGTTCATGACATTTAATTTCTCTATGCAGgttagagtct ... ttttttgcagGCAATTGACCACATCATTAATTCTGCTGCAAAATCAAACTACATGTCCGCT
EST: gi|77587570|gb|DV222950.1|DV222950
EST:     ATGGTCTTAAGCCTGTTGTAGAGTTCATGACATTTAATTTCTCTATGCAG                         GCAATTGACCACATCATTAATTCTGCTGCAAAATCAAACTACATGTCCGCT
genomic: ATGGTCTTAAGCCTGTTGTAGAGTTCATGACATTTAATTTCTCTATGCAGgttagagtct ... ttttttgcagGCAATTGACCACATCATTAATTCTGCTGCAAAATCAAACTACATGTCCGCT
EST: gi|351030938|gb|FQ438974.1|FQ438974
EST:     ATGGTCTTAAGCCTGTTGTAGAGTTCATGACATTTAATTTCTCTATGCAG                         GCAATTGACCACATCATTAATTCTGCCGCANAATCAAACTACATGTCCGCT
genomic: ATGGTCTTAAGCCTGTTGTAGAGTTCATGACATTTAATTTCTCTATGCAGgttagagtct ... ttttttgcagGCAATTGACCACATCATTAATTCTGCTGCAAAATCAAACTACATGTCCGCT
EST: gi|77577175|gb|DV217284.1|DV217284
EST:     ATGGTCTTAAGCCTGTTGTAGAGTTCATGACATTTAATTTCTCTATGCAG                         GCAATTGACCACATCATTAATTCTGCTGCAAAATCAAACTACATGTCCGCT
genomic: ATGGTCTTAAGCCTGTTGTAGAGTTCATGACATTTAATTTCTCTATGCAGgttagagtct ... ttttttgcagGCAATTGACCACATCATTAATTCTGCTGCAAAATCAAACTACATGTCCGCT
EST: gi|161721102|gb|FC070019.1|FC070019
EST:     ATGGTCTTAAGCCTGTTGTAGAGTTCATGACATTTAATTTCTCTATGCAG                         GCAATTGACCACATCATTAATTCTGCTGCAAAATCAAACTACATGTCCGCT
genomic: ATGGTCTTAAGCCTGTTGTAGAGTTCATGACATTTAATTTCTCTATGCAGgttagagtct ... ttttttgcagGCAATTGACCACATCATTAATTCTGCTGCAAAATCAAACTACATGTCCGCT
EST: gi|110378632|gb|EC943772.1|EC943772
EST:     ATGGTCTTAAGCCTGTTGTAGAGTTCATGACATTTAATTTCTCTATGCAG                         GCAATTGACCACATCATTAATTCTGCTGCAAAATCAAACTACATGTCCGCT
genomic: ATGGTCTTAAGCCTGTTGTAGAGTTCATGACATTTAATTTCTCTATGCAGgttagagtct ... ttttttgcagGCAATTGACCACATCATTAATTCTGCTGCAAAATCAAACTACATGTCCGCT
EST: gi|349814730|gb|FQ409953.1|FQ409953
EST:     ATGGTCTTAAGCCTGTTGTAGAGTTCATGACATTTAATTTCTCTATGCAG                         GCAATTGACCACATCATTAATTCTGCCGCAAAATCAAACTACATGTCCGCT
genomic: ATGGTCTTAAGCCTGTTGTAGAGTTCATGACATTTAATTTCTCTATGCAGgttagagtct ... ttttttgcagGCAATTGACCACATCATTAATTCTGCTGCAAAATCAAACTACATGTCCGCT
EST: gi|351029889|gb|FQ427729.1|FQ427729
EST:     ATGGTCTTAAGCCTGTTGTAGAGTTCATGACATTTAATTTCTCTATGCAG                         GCAATTGACCACATCATTAATTCTGCCGCAAAATCAAACTACATGTCCGCT
genomic: ATGGTCTTAAGCCTGTTGTAGAGTTCATGACATTTAATTTCTCTATGCAGgttagagtct ... ttttttgcagGCAATTGACCACATCATTAATTCTGCTGCAAAATCAAACTACATGTCCGCT
EST: gi|351027179|gb|FQ440047.1|FQ440047
EST:     ATGGTCTTAAGCCTGTTGTAGAGTTCATGACATTTAATTTCTCTATGCAG                         GCAATTGACCACATCATTAATTCTGCCGCAAAATCAAACTACATGTCCGCT
genomic: ATGGTCTTAAGCCTGTTGTAGAGTTCATGACATTTAATTTCTCTATGCAGgttagagtct ... ttttttgcagGCAATTGACCACATCATTAATTCTGCTGCAAAATCAAACTACATGTCCGCT
EST: gi|349817147|gb|FQ405152.1|FQ405152
EST:     ATGGTCTTAAGCCTGTTGTAGAGTTCATGACATTTAATTTCTCTATGCAG                         GCAATTGACCACATCATTAATTCTGCCGCAAAATCAAACTACATGTCCGCT
genomic: ATGGTCTTAAGCCTGTTGTAGAGTTCATGACATTTAATTTCTCTATGCAGgttagagtct ... ttttttgcagGCAATTGACCACATCATTAATTCTGCTGCAAAATCAAACTACATGTCCGCT
EST: gi|110365214|gb|EC927841.1|EC927841
EST:     ATGGTCTTAAGCCTGTTGTAGAGTTCATGACATTTAATTTCTCTATGCAG                         GCAATTGACCACATCATTAATTCTGCTGCAAAATCAAACTACATGTCCGCT
genomic: ATGGTCTTAAGCCTGTTGTAGAGTTCATGACATTTAATTTCTCTATGCAGgttagagtct ... ttttttgcagGCAATTGACCACATCATTAATTCTGCTGCAAAATCAAACTACATGTCCGCT
EST: gi|349828778|gb|FQ418513.1|FQ418513
EST:     ATGGTCTTAAGCCTGTTGTAGAGTTCATGACATTTAATTTCTCTATGCAG                         GCAATTGACCACATCATTAATTCTGCCGCAAAATCAAACTACATGTCCGCT
genomic: ATGGTCTTAAGCCTGTTGTAGAGTTCATGACATTTAATTTCTCTATGCAGgttagagtct ... ttttttgcagGCAATTGACCACATCATTAATTCTGCTGCAAAATCAAACTACATGTCCGCT
EST: gi|351017574|gb|FQ435927.1|FQ435927
EST:     ATGGTCTTAAGCCTGTTGTAGAGTTCATGACATTTAATTTCTCTATGCAG                         GCAATTGACCACATCATTAATTCTGCCGCAAAATCAAACTACATGTCCGCT
genomic: ATGGTCTTAAGCCTGTTGTAGAGTTCATGACATTTAATTTCTCTATGCAGgttagagtct ... ttttttgcagGCAATTGACCACATCATTAATTCTGCTGCAAAATCAAACTACATGTCCGCT
EST: gi|110685369|gb|EE062030.1|EE062030
EST:     ATGGTCTTAAGCCTGTTGTAGAGTTCATGACATTTAATTTCTCTATGCAG                         GCAATTGACCACATCATTAATTCTGCCGCAAAATCAAACTACATGTCCGCT
genomic: ATGGTCTTAAGCCTGTTGTAGAGTTCATGACATTTAATTTCTCTATGCAGgttagagtct ... ttttttgcagGCAATTGACCACATCATTAATTCTGCTGCAAAATCAAACTACATGTCCGCT
EST: gi|110365136|gb|EC928913.1|EC928913
EST:     ATGGTCTTAAGCCTGTTGTAGAGTTCATGACATTTAATTTCTCTATGCAG                         GCAATTGACCACATCATTAATTCTGCTGCAAAATCAAACTACATGTCCGCT
genomic: ATGGTCTTAAGCCTGTTGTAGAGTTCATGACATTTAATTTCTCTATGCAGgttagagtct ... ttttttgcagGCAATTGACCACATCATTAATTCTGCTGCAAAATCAAACTACATGTCCGCT
EST: gi|71863702|gb|DT012757.1|DT012757
EST:     ATGGTCTTAAGCCTGTTGTAGAGTTCATGACATTTAATTTCTCTATGCAG                         GCAATTGACCACATCATTAATTCTGCCGCAAAATCAAACTACATGTCCG
genomic: ATGGTCTTAAGCCTGTTGTAGAGTTCATGACATTTAATTTCTCTATGCAGgttagagtct ... ttttttgcagGCAATTGACCACATCATTAATTCTGCTGCAAAATCAAACTACATGTCCG
EST: gi|110711640|gb|EE088353.1|EE088353
EST:     ATGGTCTTAAGCCTGTTGTAGAGTTCATGACATTTAATTTCTCTATGCAG                         GCAATTGACCACATCATTAATTCTGCCGCAAAATCAAACTACATGTCCGCT
genomic: ATGGTCTTAAGCCTGTTGTAGAGTTCATGACATTTAATTTCTCTATGCAGgttagagtct ... ttttttgcagGCAATTGACCACATCATTAATTCTGCTGCAAAATCAAACTACATGTCCGCT
EST: gi|349832945|gb|FQ423067.1|FQ423067
EST:     ATGGTCTTAAGCCTGTTGTAGAGTTCATGACATTTAATTTCTCTATGCAG                         GCAATTGACCACATCATTAATTCTGCCGCAAAATCAAACTACATGTCCGCT
genomic: ATGGTCTTAAGCCTGTTGTAGAGTTCATGACATTTAATTTCTCTATGCAGgttagagtct ... ttttttgcagGCAATTGACCACATCATTAATTCTGCTGCAAAATCAAACTACATGTCCGCT
EST: gi|349818046|gb|FQ408821.1|FQ408821
EST:     ATGGTCTTAAGCCTGTTGTAGAGTTCATGACATTTAATTTCTCTATGCAG                         GCAATTGACCACATCATTAATTCTGCCGCAAAATCAAACTACATGTCCGCT
genomic: ATGGTCTTAAGCCTGTTGTAGAGTTCATGACATTTAATTTCTCTATGCAGgttagagtct ... ttttttgcagGCAATTGACCACATCATTAATTCTGCTGCAAAATCAAACTACATGTCCGCT
EST: gi|349830010|gb|FQ420270.1|FQ420270
EST:     ATGGTCTTAAGCCTGTTGTAGAGTTCATGACATTTAATTTCTCTATGCAG                         GCAATTGACCACATCATTAATTCTGCCGCAAAATCAAACTACATGTCCGCT
genomic: ATGGTCTTAAGCCTGTTGTAGAGTTCATGACATTTAATTTCTCTATGCAGgttagagtct ... ttttttgcagGCAATTGACCACATCATTAATTCTGCTGCAAAATCAAACTACATGTCCGCT
EST: gi|349830031|gb|FQ420291.1|FQ420291
EST:     ATGGTCTTAAGCCTGTTGTAGAGTTCATGACATTTAATTTCTCTATGCAG                         GCAATTGACCACATCATTAATTCTGCCGCAAAATCAAACTACATGTCCGCT
genomic: ATGGTCTTAAGCCTGTTGTAGAGTTCATGACATTTAATTTCTCTATGCAGgttagagtct ... ttttttgcagGCAATTGACCACATCATTAATTCTGCTGCAAAATCAAACTACATGTCCGCT
EST: gi|110713083|gb|EE088693.1|EE088693
EST:     ATGGTCTTAAGCCTGTTGTAGAGTTCATGACATTTAATTTCTCTATGCAG                         GCAATTGACCACATCATTAATTCTGCCGCAAAATCAAACTACATGTCCGCT
genomic: ATGGTCTTAAGCCTGTTGTAGAGTTCATGACATTTAATTTCTCTATGCAGgttagagtct ... ttttttgcagGCAATTGACCACATCATTAATTCTGCTGCAAAATCAAACTACATGTCCGCT
EST: gi|351015619|gb|FQ427104.1|FQ427104
EST:     ATGGTCTTAAGCCTGTTGTAGAGTTCATGACATTTAATTTCTCTATGCAG                         GCAATTGACCACATCATTAATTCTGCCGCAAAATCAAACTACATGTCCGCT
genomic: ATGGTCTTAAGCCTGTTGTAGAGTTCATGACATTTAATTTCTCTATGCAGgttagagtct ... ttttttgcagGCAATTGACCACATCATTAATTCTGCTGCAAAATCAAACTACATGTCCGCT
EST: gi|351028389|gb|FQ427285.1|FQ427285
EST:     ATGGTCTTAAGCCTGTTGTAGAGTTCATGACATTTAATTTCTCTATGCAG                         GCAATTGACCACATCATTAATTCTGCCGCAAAATCAAACTACATGTCCGCT
genomic: ATGGTCTTAAGCCTGTTGTAGAGTTCATGACATTTAATTTCTCTATGCAGgttagagtct ... ttttttgcagGCAATTGACCACATCATTAATTCTGCTGCAAAATCAAACTACATGTCCGCT
EST: gi|110719438|gb|EE094576.1|EE094576
EST:     ATGGTCTTAAGCCTGTTGTAGAGTTCATGACATTTAATTTCTCTATGCAG                         GCAATTGACCACATCATTAATTCTGCCGCAAAATCAAACTACATGTCCGCT
genomic: ATGGTCTTAAGCCTGTTGTAGAGTTCATGACATTTAATTTCTCTATGCAGgttagagtct ... ttttttgcagGCAATTGACCACATCATTAATTCTGCTGCAAAATCAAACTACATGTCCGCT
EST: gi|349826357|gb|FQ417854.1|FQ417854
EST:     ATGGTCTTAAGCCTGTTGTAGAGTTCATGACATTTAATTTCTCTATGCAG                         GCAATTGACCACATCATTAATTCTGCCGCAAAATCAAACTACATGTCCGCT
genomic: ATGGTCTTAAGCCTGTTGTAGAGTTCATGACATTTAATTTCTCTATGCAGgttagagtct ... ttttttgcagGCAATTGACCACATCATTAATTCTGCTGCAAAATCAAACTACATGTCCGCT
EST: gi|349815315|gb|FQ400470.1|FQ400470
EST:     ATGGTCTTAAGCCTGTTGTAGAGTTCATGACATTTAATTTCTCTATGCAG                         GCAATTGACCACATCATTAATTCTGCCGCAAAATCAAACTACATGTCCGCT
genomic: ATGGTCTTAAGCCTGTTGTAGAGTTCATGACATTTAATTTCTCTATGCAGgttagagtct ... ttttttgcagGCAATTGACCACATCATTAATTCTGCTGCAAAATCAAACTACATGTCCGCT
EST: gi|110711678|gb|EE088431.1|EE088431
EST:     ATGGTCTTAAGCCTGTTGTAGAGTTCATGACATTTAATTTCTCTATGCAG                         GCAATTGACCACATCATTAATTCTGCCGCAAAATCAAACTACATGTCCGCT
genomic: ATGGTCTTAAGCCTGTTGTAGAGTTCATGACATTTAATTTCTCTATGCAGgttagagtct ... ttttttgcagGCAATTGACCACATCATTAATTCTGCTGCAAAATCAAACTACATGTCCGCT
EST: gi|161715045|gb|FC064252.1|FC064252
EST:     ATGGTCTTAAGCCTGTTGTAGAGTTCATGACATTTAATTTCTCTATGCAG                         GCAATTGACCACATCATTAATTCTGCTGCAAAATCAAACTACATGTCCGCT
genomic: ATGGTCTTAAGCCTGTTGTAGAGTTCATGACATTTAATTTCTCTATGCAGgttagagtct ... ttttttgcagGCAATTGACCACATCATTAATTCTGCTGCAAAATCAAACTACATGTCCGCT
EST: gi|351014795|gb|FQ437995.1|FQ437995
EST:     ATGGTCTTAAGCCTGTTGTAGAGTTCATGACATTTAATTTCTCTATGCAG                         GCAATTGACCACATCATTAATTCTGCCGCAAAATCAAACTACAATGTCCGC
genomic: ATGGTCTTAAGCCTGTTGTAGAGTTCATGACATTTAATTTCTCTATGCAGgttagagtct ... ttttttgcagGCAATTGACCACATCATTAATTCTGCTGCAAAATCAAACTACA-TGTCCGC
EST: gi|294966748|gb|GW837767.1|GW837767
EST:     ATGGTCTTAAGCCTGTTGTAGAGTTCATGACATTTAATTTCTCTATGCAG                         GCAATTGACCACATCATTAATTCTGCCGCAAAATCAAACTACATGTCCGCT
genomic: ATGGTCTTAAGCCTGTTGTAGAGTTCATGACATTTAATTTCTCTATGCAGgttagagtct ... ttttttgcagGCAATTGACCACATCATTAATTCTGCTGCAAAATCAAACTACATGTCCGCT
EST: gi|351027102|gb|FQ439963.1|FQ439963
EST:     ATGGTCTTAAGCCTGTTGTAGAGTTCATGACATTTAATTTCTCTATGCAG                         GCAATTGACCACATCATTAATTCTGCCGCAAAATCAAACTACATGTCCGCT
genomic: ATGGTCTTAAGCCTGTTGTAGAGTTCATGACATTTAATTTCTCTATGCAGgttagagtct ... ttttttgcagGCAATTGACCACATCATTAATTCTGCTGCAAAATCAAACTACATGTCCGCT
EST: gi|351029935|gb|FQ427775.1|FQ427775
EST:     ATGGTCTTAAGCCTGTTGTAGAGTTCATGACATTTAATTTCTCTATGCAG                         GCAATTGACCACATCATTAATTCTGCCGCAAAATCAAACTACATGTCCGCT
genomic: ATGGTCTTAAGCCTGTTGTAGAGTTCATGACATTTAATTTCTCTATGCAGgttagagtct ... ttttttgcagGCAATTGACCACATCATTAATTCTGCTGCAAAATCAAACTACATGTCCGCT
EST: gi|349812258|gb|FQ411853.1|FQ411853
EST:     ATGGTCTTAAGCCTGTTGTAGAGTTCATGACATTTAATTTCTCTATGCAG                         GCAATTGACCACATCATTAATTCTGCCGCAAAATCAAACTACATGTCCGCT
genomic: ATGGTCTTAAGCCTGTTGTAGAGTTCATGACATTTAATTTCTCTATGCAGgttagagtct ... ttttttgcagGCAATTGACCACATCATTAATTCTGCTGCAAAATCAAACTACATGTCCGCT
EST: gi|110398758|gb|EC965232.1|EC965232
EST:     ATGGTCTTAAGCCTGTTGTAGAGTTCATGACATTTAATTTCTCTATGCAG                         GCAATTGACCACATCATTAATTCTGCTGCAAAATCAAACTACATGTCCGCT
genomic: ATGGTCTTAAGCCTGTTGTAGAGTTCATGACATTTAATTTCTCTATGCAGgttagagtct ... ttttttgcagGCAATTGACCACATCATTAATTCTGCTGCAAAATCAAACTACATGTCCGCT
EST: gi|110718337|gb|EE095058.1|EE095058
EST:     ATGGTCTTAANCCTGTTGTAAAGTTCATGACATTTAATTTCTCTATGCAG                         GCAATTGACCACATCATTAATTCTGCCGCAAAATCAAACTACATGTCCGCT
genomic: ATGGTCTTAAGCCTGTTGTAGAGTTCATGACATTTAATTTCTCTATGCAGgttagagtct ... ttttttgcagGCAATTGACCACATCATTAATTCTGCTGCAAAATCAAACTACATGTCCGCT
EST: gi|161716774|gb|FC067499.1|FC067499
EST:     ATGGTCTTAAGCCTGTTGTAGAGTTCATGACATTTAATTTCTCTATGCAG                         GCAATTGACCACATCATTAATTCTGCTGCAAAATCAAACTACATGTCCGCT
genomic: ATGGTCTTAAGCCTGTTGTAGAGTTCATGACATTTAATTTCTCTATGCAGgttagagtct ... ttttttgcagGCAATTGACCACATCATTAATTCTGCTGCAAAATCAAACTACATGTCCGCT
EST: gi|110718877|gb|EE096214.1|EE096214
EST:     ATGGTCTTAAGCCTGTTGTAGAGTTCATGACATTTAATTTCTCTATGCAG                         GCAATTGACCACATCATTAATTCTGCCGCAAAATCAAACTACATGTCCGCT
genomic: ATGGTCTTAAGCCTGTTGTAGAGTTCATGACATTTAATTTCTCTATGCAGgttagagtct ... ttttttgcagGCAATTGACCACATCATTAATTCTGCTGCAAAATCAAACTACATGTCCGCT
EST: gi|110702444|gb|EE081168.1|EE081168
EST:     ATGGTCTTAAGCCTGTTGTAGAGTTCATGACATTTAATTTCTCTATGCAG                         GCAATTGACCACATCATTAATTCTGCCGCAAAATCAAACTACATGTCCGCT
genomic: ATGGTCTTAAGCCTGTTGTAGAGTTCATGACATTTAATTTCTCTATGCAGgttagagtct ... ttttttgcagGCAATTGACCACATCATTAATTCTGCTGCAAAATCAAACTACATGTCCGCT
EST: gi|161710596|gb|FC058147.1|FC058147
EST:     ATGGTCTTAAGCCTGTTGTAGAGTTCATGACATTTAATTTCTCTATGCAG                         GCAATTGACCACATCATTAATTCTGCTGCAAAATCAAACTACATGTCCGCT
genomic: ATGGTCTTAAGCCTGTTGTAGAGTTCATGACATTTAATTTCTCTATGCAGgttagagtct ... ttttttgcagGCAATTGACCACATCATTAATTCTGCTGCAAAATCAAACTACATGTCCGCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCTGGTTTTACTGGGATTGGAGTTGGTGCTGCTTACTATGGTCTTAAGCCTGTTGTAGAGTTCATGACATTTAATTTCTCTATGCAGgttagagtcttatcactatatactcaaattatgaaaatttctagttctgattttatttgatgttctcaaattgaacctttagctgggattggtcaaaact

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaattga