1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AATGGCAGAGGCAGAGCGGCATTTCTTGGAAGCTGAGTATGATGAGTATACTGCTACAAATGCCACTGGAGCTGCATTTTGCCGTTCAGTTGCTCTAATTgtaagtcctcaaaaaacaatgaatcatgatttagatggaaggaggaattatttgcagaccccaaaaatcatcttcttcattctccattagacatttcctt...
species | Vitis vinifera |
transcript | Vv01s0026g02470.t01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CTGCTACAAATGCCACTGGAGCTGCATTTTGCCGTTCAGTTGCTCTAATT TTGATGGCCCTTTTGCTCTTGCGCCATGCATTGACCATTACAGATGCAGATEST: gi|351030409|gb|FQ432347.1|FQ432347
genomic: CTGCTACAAATGCCACTGGAGCTGCATTTTGCCGTTCAGTTGCTCTAATTgtaagtcctc ... tgtttggcagTTGATGGCCCTTTTGCTCTTGCGCCATGCATTGACCATTACAGATGCAGAT
EST: CTGCTACAAATGCCACTGGAGCTGCATTTTGCCGTTCAGTTGCTCTAATT TTGATGGCCCTTTTGCTCTTGCGCCATGCATTGACCATTACAGATGCAGATEST: gi|110685836|gb|EE062903.1|EE062903
genomic: CTGCTACAAATGCCACTGGAGCTGCATTTTGCCGTTCAGTTGCTCTAATTgtaagtcctc ... tgtttggcagTTGATGGCCCTTTTGCTCTTGCGCCATGCATTGACCATTACAGATGCAGAT
EST: CTGCTACAAATGCCACTGGAGCTGCATTTTGCCGTTCAGTTGCTCTAATT TTGATGGCCCTTTTGCTCTTGCGCCATGCATTGACCATTACAGATGCAGATEST: gi|110689841|gb|EE066416.1|EE066416
genomic: CTGCTACAAATGCCACTGGAGCTGCATTTTGCCGTTCAGTTGCTCTAATTgtaagtcctc ... tgtttggcagTTGATGGCCCTTTTGCTCTTGCGCCATGCATTGACCATTACAGATGCAGAT
EST: CTGCTACAAATGCCACTGGAGCTGCATTTTGCCGTTCAGTTGCTCTAATT TTGATGGCCCTTTTGCTCTTGCGCCATGCATTGACCATTACAGATGCAGATEST: gi|110713173|gb|EE088860.1|EE088860
genomic: CTGCTACAAATGCCACTGGAGCTGCATTTTGCCGTTCAGTTGCTCTAATTgtaagtcctc ... tgtttggcagTTGATGGCCCTTTTGCTCTTGCGCCATGCATTGACCATTACAGATGCAGAT
EST: CTGCTACAAATGCCACTGGAGCTGCATTTTGCCGTTCAGTTGCTCTAATT TTGATGGCCCTTTTGCTCTTGCGCCATGCATTGACCATTACAGATGCAGATEST: gi|32248365|gb|CD714184.1|CD714184
genomic: CTGCTACAAATGCCACTGGAGCTGCATTTTGCCGTTCAGTTGCTCTAATTgtaagtcctc ... tgtttggcagTTGATGGCCCTTTTGCTCTTGCGCCATGCATTGACCATTACAGATGCAGAT
EST: CTGCTACAAATGCCACTGGAGCTGCATTTTGCCGTTCAGTTGCTCTAATT TTGATGGCCCTTTTGCTCTTGCGCCATGCATTGACCATTACAGATGCAGATEST: gi|32249399|gb|CD715218.1|CD715218
genomic: CTGCTACAAATGCCACTGGAGCTGCATTTTGCCGTTCAGTTGCTCTAATTgtaagtcctc ... tgtttggcagTTGATGGCCCTTTTGCTCTTGCGCCATGCATTGACCATTACAGATGCAGAT
EST: CTGCTACAAATGCCACTGGAGCTGCATTTTGCCGTTCAGTTGCTCTAATT TTGATGGCCCTTTTGCTCTTGCGCCATGCATTGACCATTACAGATGCAGATEST: gi|30298557|gb|CB975351.1|CB975351
genomic: CTGCTACAAATGCCACTGGAGCTGCATTTTGCCGTTCAGTTGCTCTAATTgtaagtcctc ... tgtttggcagTTGATGGCCCTTTTGCTCTTGCGCCATGCATTGACCATTACAGATGCAGAT
EST: CTGCTACAAATGCCACTGGAGCTGCATTTTGCCGTTCAGTTGCTCTAATT TTGATGGCCCTTTTGCTCTTGCGCCATGCATTGACCATTACAGATGCAGATEST: gi|30327239|gb|CD010501.1|CD010501
genomic: CTGCTACAAATGCCACTGGAGCTGCATTTTGCCGTTCAGTTGCTCTAATTgtaagtcctc ... tgtttggcagTTGATGGCCCTTTTGCTCTTGCGCCATGCATTGACCATTACAGATGCAGAT
EST: CTGCTACAAATGCCACTGGAGCTGCATTTTGCCGTTCAGTTGCTCTAATT TTGATGGCCCTTTTGCTCTTGCGCCATGCATTGACCATTACAGATGCAGATEST: gi|110715491|gb|EE093604.1|EE093604
genomic: CTGCTACAAATGCCACTGGAGCTGCATTTTGCCGTTCAGTTGCTCTAATTgtaagtcctc ... tgtttggcagTTGATGGCCCTTTTGCTCTTGCGCCATGCATTGACCATTACAGATGCAGAT
EST: CTGCTACAAATGCCACTGGAGCTGCATTTTGCCGTTCAGTTGCTCTAATT TTGATGGCCCTTTTGCTCTTGCGCCATGCATTGACCATTACAGATGCAGAT
genomic: CTGCTACAAATGCCACTGGAGCTGCATTTTGCCGTTCAGTTGCTCTAATTgtaagtcctc ... tgtttggcagTTGATGGCCCTTTTGCTCTTGCGCCATGCATTGACCATTACAGATGCAGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATGGCAGAGGCAGAGCGGCATTTCTTGGAAGCTGAGTATGATGAGTATACTGCTACAAATGCCACTGGAGCTGCATTTTGCCGTTCAGTTGCTCTAATTgtaagtcctcaaaaaacaatgaatcatgatttagatggaaggaggaattatttgcagaccccaaaaatcatcttcttcattctccattagacatttcctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggaggaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaaaat