1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GTGTATTTGGCAAATTTAAGACTCAAGGAAGTTGGTACAGATGTGCTAATTACTGCATATGAGCCAATCTTAATAAAgtaagtaccaagaataagtcatttggtcataaagcaggcagatttttaatttgttgaaacttctaatctgactgatctccaagggacacaaaccagtaac...
species | Vitis vinifera |
transcript | Vv01s0026g02210.t01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GAAGTTGGTACAGATGTGCTAATTACTGCATATGAGCCAATCTTAATAAA CCCTTTTAGTGACAGTGCTGGTACAGTTGGTGCTGGTTTACCTGTTCCTGCEST: gi|34416197|gb|CF414951.1|CF414951
genomic: GAAGTTGGTACAGATGTGCTAATTACTGCATATGAGCCAATCTTAATAAAgtaagtacca ... gtggttgcagCCCTTTTAGTGACAGTGCTGGTACAGTTGGTGCTGGTTTACCTGTTCCTGC
EST: GAAGTTGGTACAGATGTGCTAATTACTGCATATGAGGCAATCTTAATAAA CCCTTTTAGTGACAGTGCTGGTACAGTTGGTGCTGGTTTACCTGTTCCTGCEST: gi|32459107|gb|CD800281.1|CD800281
genomic: GAAGTTGGTACAGATGTGCTAATTACTGCATATGAGCCAATCTTAATAAAgtaagtacca ... gtggttgcagCCCTTTTAGTGACAGTGCTGGTACAGTTGGTGCTGGTTTACCTGTTCCTGC
EST: GAAGTTGGTACAGATGTGCTAATTACTGCATATGAGCCAATCTTAATAAA CCCTTTTAGTGACAGTGCTGGTACAGTTGGTGCTGGTTTACCTGTTCCTGC
genomic: GAAGTTGGTACAGATGTGCTAATTACTGCATATGAGCCAATCTTAATAAAgtaagtacca ... gtggttgcagCCCTTTTAGTGACAGTGCTGGTACAGTTGGTGCTGGTTTACCTGTTCCTGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGTATTTGGCAAATTTAAGACTCAAGGAAGTTGGTACAGATGTGCTAATTACTGCATATGAGCCAATCTTAATAAAgtaagtaccaagaataagtcatttggtcataaagcaggcagatttttaatttgttgaaacttctaatctgactgatctccaagggacacaaaccagtaac
- - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaataag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agggaca