Sequence
atgc intronic sequence ATGC exonic sequenceGCTTCATCAGCTTACTGGAGAGGAAATAAAGATCGTGAGAGTTTGCAAAGAGTTTATGGGATATCTTATCCTGATTCAAAACGATTGAAGgtaatatcatttttggccttttttttctatgtatgatttatttcttctgatttgctttgttagttggtcagttgtcttgttgaactgctggatatatata...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0026g00340.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA01G03930.1 (Glycine max), 5'ss of exon 6
GCTTCATCAGCTTACTGGAGAGGAAATAAAGATCGTGAGAGTTTGCAAAGAGTTTATGGGATATCTTATCCTGATTCAAAACGATTGAAGgtaatat-catttttggccttttttttctatgta--tgatttatttcttctgatttgctttgttagttggtcagttgtcttgttg-aactgctggatatatata
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GCTTCATCAGCATATTGGAGGGGGGACAAAGATCGGGAAAGTTTACAAAGAGTTTATGGCATATCTTATCCTGATCAGAAAAGTCTGAAGgtgattttcatttcatatgttatttctttgagtaaaccattcagctattcagactgagctg--tggtggattgaatgttcaattgcagttccttgtggaatg--
upper sequence: Vv01s0026g00340.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA02G03750.1 (Glycine max), 5'ss of exon 6
GCTTCATCAGCTTACTGGAGAGGAAATAAAGATCGTGAGAGTTTGCAAAGAGTTTATGGGATATCTTATCCTGATTCAAAACGATTGAAGgtaatat-catttttggccttttttttctatgta--tgatttatttcttctgatttgctttgttagttggtcagttgtcttgttg-aactgctggatatatata
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GCTTCATCAGCATATTGGAGGGGGGACAAAGATCGGGAAAGTTTACAAAGAGTTTATGGCATATCTTATCCTGATCAGAAAAGTCTAAAGgtgattttcatttcataagttatttctttgagtaatccattcagctattcagactgagctg--tggtggattgaatgttcaattgcagttccttgtggaacg--
upper sequence: Vv01s0026g00340.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT5G26830.1 (Arabidopsis thaliana), 5'ss of exon 7
GCTTCATCAGCTTACTGGAGAGGAAATAAAGATCGTGAGAGTTTGCAAAGAGTTTATGGGATATCTTATCCTGATTCAAAACGATTGAAGgtaat-atcatttttggccttttttttctatgtatgat---ttatttcttctgatttgctttgttagttggtcagttgtcttgttgaactgctggatatatata
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GCCTCATCAGCTTACTGGAAGGGTGACAAAGACCGTGAGAGCTTGCAGAGAGTTTATGGGATATCTTATCCTGATCAGAAGCAGCTGAAGgtactcaaaatatcttaattatttatggcagctacgctgtgtcataagtatgcataatatctatcatttggtcgacag--------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|156735898|gb|EV240019.1|EV240019EST: GTTTGCAAAGAGTTTATGGGATATCTTATCCTGATTCAAAACGATTGAAG GAATATATTGCTCGAATTGAAGAAGCAAAGAAATATGACCACAGATTGTTG
genomic: GTTTGCAAAGAGTTTATGGGATATCTTATCCTGATTCAAAACGATTGAAGgtaatatcat ... tcttggtcagGAATATATTGCTCGAATTGAAGAAGCAAAGAAATATGACCACAGATTGTTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCTTCATCAGCTTACTGGAGAGGAAATAAAGATCGTGAGAGTTTGCAAAGAGTTTATGGGATATCTTATCCTGATTCAAAACGATTGAAGgtaatatcatttttggccttttttttctatgtatgatttatttcttctgatttgctttgttagttggtcagttgtcttgttgaactgctggatatatata
- - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG