Sequence
atgc intronic sequence ATGC exonic sequenceTGCAAACAGGGTGGCAGTAGTTGTAGCAAATGAATGGAAAGATGCTAATGACAAGGTGATGCCCGTAAAACAATGGCTAGAGGAACGGCGATTCTTGCAAgtaaatactctgaagttcttattgtttcaaaacttgagctattatttactgtttctttttctttgatcatgactgtgtttggcttttgtagtttccacagtttgtaattgttaccaaaacctcttgttacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0011g05790.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: LOC_Os12g44340.1 (Oryza sativa), 5'ss of exon 7
TGCAAACAGGGTGGCAGTAGTTGTAGCAAATGAATGGAAAGATGCTAATGACAAGGTGATGCCCGTAAAACAATGGCTAGAGGAACGGCGATTCTTGCAAgtaaatactctgaagttcttattgttt-caaaacttgagctattatttactgtttcttt----ttctttgatc--atgactgtgtttggcttttgtagtttccacagtttgta-attgttaccaaaacctcttgttacag--------------------------------------
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GGCAAATAGAGTTGCAGTAGTGGTGGCAAATGAATGGAAAGATGGCAATGATAAAGTAATGCCTGTTAAACAATGGTTAGAAGAACGGAGGATTTTACAAgtaagtaatgctatcatttaattatgtgctattgctgacttgttctggatggatacagtgaagccttttaatgcaacaattgttttcacttttccccactcctaaacggagtatactatggttcatctttttggggtctaatttgttgggaattttcttttctttctttcttttgcag
upper sequence: Vv01s0011g05790.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: LOC_Os02g50320.2 (Oryza sativa), 5'ss of exon 7
TGCAAACAGGGTGGCAGTAGTTGTAGCAAATGAATGGAAAGATGCTAATGACAAGGTGATGCCCGTAAAACAATGGCTAGAGGAACGGCGATTCTTGCAAgtaaatactctgaagttcttattgtttcaaaacttgagctattatttactgtttctttttctttgatcatgactgtgtttggcttttgtagtttccacagtttg-taattgttaccaaaacctcttgttacag
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AGCAAACAGAGTTGCTGTTGTAGTTGCAAATGAGTGGAAAGATGCTAATGACAAAGTAATGCCTGTCAAACAGTGGCTTGAAGAGCGCAGGTTTCTGCAGgtaaagatgatatacttctgtttgtttt----ttgaagct--catctacggttgtccatgcaaag-tcac-acttcacatcatatattcaatttttatggcatgacaaatgtttcttcag-------------
upper sequence: Vv01s0011g05790.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G039325_T01 (Zea mays), 5'ss of exon 7
TGCAAACAGGGTGGCAGTAGTTGTAGCAAATGAATGGAAAGATGCTAATGACAAGGTGATGCCCGTAAAACAATGGCTAGAGGAACGGCGATTCTTGCAAgtaaatactctgaagt--tcttattgttt--caa---aacttgagctattatttactgt-------ttctttttctttgatca---tgactgtgtttggcttttgtagtttccacagtttgtaattgttaccaaaacctcttgttacag----------------
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AGCAAACAGGGTTGCTTCTGTTGTGGCCAATGAGTGGAAAGATTCTAATGACAAGGTGATGCCAGTTAAACAGTGGCTTGAAGAGCGTAGGTTCTTGCAGgtctgatggttaaactggcctttttctttaccaatgtactttgtagcatccacctctgcaaaaatatgcatattctttggtgaaacaaaatgtaccagctgttggtccgttgttggacacgtttctttgttgaatatcatttgtgataatttcttgtttttacag
upper sequence: Vv01s0011g05790.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G008556_T01 (Zea mays), 5'ss of exon 7
TGCAAACAGGGTGGCAGTAGTTGTAGCAAATGAATGGAAAGATGCTAATGACAAGGTGATGCCCGTAAAACAATGGCTAGAGGAACGGCGATTCTTGCAAgtaaatactctgaagttcttattgtttcaaaacttgagctattatttactgtttctttttctttgatcatgactgtgtttggcttt-------tgtagtttccacagtttgtaattgttacc---aaaacctcttgttacag----------------
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AGCAAACAGAGTTGCTTCTGTTGTTGCTAATGAGTGGAAAGATTCTAATGACAAGGTGATGCCAGTTAAACAGTGGCTTGAAGAGCGTAGGTTCTTCCAGgttgg-atggttaaactagcattttctttaccaatgtacttttttttg-tattcaactctgcacaaatatgcatattctttggtgaaacaaaatgtaccacctgctggacatggttcttttcttgagtatcatatgtgatactttcttgtttctacag
upper sequence: Vv01s0011g05790.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM5G832989_T01 (Zea mays), 5'ss of exon 7
TGCAAACAGGGTGGCAGTAGTTGTAGCAAATGAATGGAAAGATGCTAATGACAAGGTGATGCCCGTAAAACAATGGCTAGAGGAACGGCGATTCTTGCAAgtaaatactctgaagtt-cttattgtttcaaaacttgagctattatttactgtttctttttctttgatcatgactgtgtttggcttttgtagtttccacagtttgtaattgttaccaaaacctcttgttacag
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TGCAAATAGGGTTGCTGTTGTGGTCGCAAACGAGTGGAAAGATGCTAATGACAAAGTAATGCCTGTTAAACAGTGGCTGGAAGAGCGAAGGTTCCTGCAGgtagg-atgctaaagctgtttcatatagggcatccacagttatcagt-agagtgtaaaatgcattagttctaa-tgttgtcgacaaaaactgcttctgtag--------------------------------
upper sequence: Vv01s0011g05790.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA08G05100.1 (Glycine max), 5'ss of exon 7
TGCAAACAGGGTGGCAGTAGTTGTAGCAAATGAATGGAAAGATGCTAATGACAAGGTGATGCCCGTAAAACAATGGCTAGAGGAACGGCGATTCTTGCAAgtaaatac--tctgaagttcttattgtttcaaaacttgagctattatttactgtttctttttctttgatcatgactgtgtttggcttttgtagtttccacagtttgtaattgtt-accaaaacctcttgttacag-
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AGCAAACAGAGTAGCTGTAGTGGTTGCAAATGAATGGAAAGATGCTAATGACAAAGTGATGCCTGTGAAACAATGGCTTGAAGAACGACGATTCTTGCAGgtggatatcatttctgattcctttggatttaatcttttgtgcctttttttttataaaaaaaagtatatatcttcttgcatttggtttccct--tcaatacggtttccatttttttaccaaactacacttttattag
upper sequence: Vv01s0011g05790.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA05G34560.1 (Glycine max), 5'ss of exon 7
TGCAAACAGGGTGGCAGTAGTTGTAGCAAATGAATGGAAAGATGCTAATGACAAGGTGATGCCCGTAAAACAATGGCTAGAGGAACGGCGATTCTTGCAAgtaaatac--tctgaagttcttattgtttcaaaactt-gagctattatttactgtttctttttctttgatcatgactgtgtttggcttttgtagtttccacagtttgtaattgttaccaaaacctcttgttacag
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AGCAAACAGAGTAGCTGTAGTGGTTGCAAATGAATGGAAAGATGCTAATGACAAAGTGATGCCTGTGAAACAATGGCTTGAAGAACGACGATTTTTGCAGgtgaatattatttctgattcctttggatttaaactttcgtggttttttttaaagtatatatcttcctgcatttggcttcccct--tcaatgtggttttcat--tttgt---ttttaccaaactacactcttatag
upper sequence: Vv01s0011g05790.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA02G09390.1 (Glycine max), 5'ss of exon 7
TGCAAACAGGGTGGCAGTAGTTGTAGCAAATGAATGGAAAGATGCTAATGACAAGGTGATGCCCGTAAAACAATGGCTAGAGGAACGGCGATTCTTGCAAgtaaa------------tactctga-agttcttattgtttcaaaacttgagctattatttactgtttctttttctttgatcatgactgtgtt----tggcttttgtagttt--ccacagtttgtaattgttaccaaaacctcttgttacag
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AGCAAACAGAGTAGCTGTTGTGGTTGCAAATGAATGGAAAGATGCCAATGATAAAGTGATGCCTGTCAAACAATGGCTTGAAGAACGCCGATTCTTGCAGgtaatatttttttgttttactctgccaattcatctgaatttagtggttgagtttttgaattccattactctttctgcttatatttcttttttatagtaatttcccgcatctggcttcgctttccacttattattaaattgaattcttatag
upper sequence: Vv01s0011g05790.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA07G26540.1 (Glycine max), 5'ss of exon 7
TGCAAACAGGGTGGCAGTAGTTGTAGCAAATGAATGGAAAGATGCTAATGACAAGGTGATGCCCGTAAAACAATGGCTAGAGGAACGGCGATTCTTGCAAgtaaa------------tactctga-agttcttattgtttcaaaacttgagctattatttactgt---ttctttttctttgatcatgac---tgtgtttggcttttgtagttt-ccacagtttgtaattgttaccaaaacctcttgttacag
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AGCAAACAGAGTAGCTGTTGTGGTTGCAAATGAATGGAAAGATGCTAATGATAAAGTGATGCCTGTCAAACAGTGGCTTGAAGAACGTCGATTCTTGCAGgtaatatttttttgctttactctgccaattcatctgaatttagtggttgagttcttgacttccatgactctttttgcttatatttcttcttttatattaatttcccacatttggcttcgctttccgcttattattaaattgcattcttatag
upper sequence: Vv01s0011g05790.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT1G24764.1 (Arabidopsis thaliana), 5'ss of exon 7
TGCAAACAGGGTGGCAGTAGTTGTAGCAAATGAATGGAAAGATGCTAATGACAAGGTGATGCCCGTAAAACAATGGCTAGAGGAACGGCGATTCTTGCAAgtaaatactctgaagttcttattgtttcaaaacttgagctattatttactgtttctttttctttgatcatgactgtgtttggcttttgtagtttccacagtttgtaattgttaccaaaacctcttgttacag
|||||||| || || || ||||||||||| |||||||||| |||||| || |||||||| || || |||||||| || ||||| | || | || || |||| ||| | | | | | | ||| | ||| | ||| || | | | | || | | || | | ||| | | || | |||
AGCAAACAGAGTTGCCACTGTGGTAGCAAATGAGTGGAAAGATGGTAATGATAAAGTGATGCCTGTGAAGCAATGGCTCGAAGAACGAAGGTTTCTACAGgtt--tactttgatatgatggcccctct----cctagattcttaggacgcaaattatttgcagtgagcaaggcc--------catccata-tctacattctcacttcttgatcctcaacttttttgcag---
upper sequence: Vv01s0011g05790.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT1G14840.1 (Arabidopsis thaliana), 5'ss of exon 7
TGCAAACAGGGTGGCAGTAGTTGTAGCAAATGAATGGAAAGATGCTAATGACAAGGTGATGCCCGTAAAACAATGGCTAGAGGAACGGCGATTCTTGCAAgtaaatactctgaagttcttattgtttcaaaacttgagctattatttactgtttc--tttttctttgatcatgactgtgtttggcttttgtagtttccacagtttgtaattgttaccaaaacctcttgttacag
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TGCAAACAGAGTTGCTACTGTTGTAGCTAACGAATGGAAAGATTCTAATGACAAAGTGATGCCTGTAAGGCAGTGGCTTGAAGAACGTAGATTTTTGCAGgtcattgct----gatacatatt-----aatatttaaattctc--ttgctgcttcaaattgtgattcatattcacggagattaacttatactattgccaccaccgttatgtttggacag---------------
upper sequence: Vv01s0011g05790.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT1G68060.1 (Arabidopsis thaliana), 5'ss of exon 7
TGCAAACAGGGTGGCAGTAGTTGTAGCAAATGAATGGAAAGATGCTAATGACAAGGTGATGCCCGTAAAACAATGGCTAGAGGAACGGCGATTCTTGCAAgtaaatactctgaagttcttattgtttcaaaacttgagctattatttactgtttctttttctttgatcatgactgtgtttggcttttgtagtttccacagtttgtaattgttaccaaaacctcttgttacag
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AGCAAACAGAGTTGCGACAGTGGTTGCAAATGAATGGAAAGATGGTAATGATAAAGTGATGCCTGTGAAGCAATGGCTTGAAGAAAGAAGGTTTCTACAGgtt--tactttgatatgattgcccttttc---ctaaatttgtggaatccagattctttga----agtgacaaaggcacacaacctt----acattctcactctttaact-----------ctcttcttgcag
upper sequence: Vv01s0011g05790.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT1G14840.2 (Arabidopsis thaliana), 5'ss of exon 7
---------------------------------------------TGCAAACAGGGTGGCAGTAGTTGTAGCAAATGAATGGAAAGATGCTAATGACAAGGTGATGCCCGTAAAACAATGGCTAGAGGAACGGCGATTCTTGCAAgtaaatactctgaagttcttattgtttcaaaacttgagctattatttactgtttc--tttttctttgatcatgactgtgtttggcttttgtagtttccacagtttgtaattgttaccaaaacctcttgttacag
||||||||| || || |||||||| || |||||||||||| |||||||||| |||||||| |||| || ||||| || ||||| |||| ||||| || | | || | | |||| || | || | | | || ||| ||| || | || || | || | | || ||| | || |||| || | | ||
AGAGAGGAAAATCCTTGAACGGGAATTGGCCCGTGCGAAGGTAAATGCAAACAGAGTTGCTACTGTTGTAGCTAACGAATGGAAAGATTCTAATGACAAAgtgatgcctgtaaggcagtggcttgaagaacgtagatttttgcaggtcattgct----gatacatatt-----aatatttaaattctc--ttgctgcttcaaattgtgattcatattcacggagattaacttatactattgccaccaccgttatgtttggacag---------------
upper sequence: Vv01s0011g05790.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: PP1S31_77V6.1 (Physcomitrella patens), 5'ss of exon 7
TGCAAACAGGGTGGCAGTAGTTGTAGCAAATGAATGGAAAGATGCTAATGACAAGGTGATGCCCGTAAAACAATGGCTAGAGGAACGGCGATTCTTGCAAgtaaat---actctgaagttcttattgtttcaaaacttgagctattatttactgtttctttttctttgatcatgactgtgtttggcttttgtagtttccacagtttgtaattgttaccaaaacctcttgttacag
|| ||||| || ||||| ||||| |||||||| ||||| ||||| ||||||||||| ||||| || || || ||||| || || || | || |||| || | | | || ||| || | | || | | | ||||| | | | | | | | ||| ||||| | || | ||| | || || | || ||||||
AGCTAACAGAGTTGCAGTTGTTGTTGCAAATGAGTGGAAGGATGCAAATGACAAGGTTATGCCTGTCAAGCAGTGGCTCGATGAGAGGAGGTTTATGCAGgttcgtttgattttgcagtctgtacc--tcctgaatgttatcgattatgaggtaagcagtaaaatacaactttttttctttttt-cttttctgattgtga-gttttctgatcattgtcgttac----gattacag
upper sequence: Vv01s0011g05790.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: EFJ18059 (Selaginella moellendorffii), 5'ss of exon 7
TGCAAACAGGGTGGCAGTAGTTGTAGCAAATGAATGGAAAGATGCTAATGACAAGGTGATGCCCGTAAAACAATGGCTAGAGGAACGGCGATTCTTGCAAgtaaatactctgaagttcttattgtttcaaaacttgagctattatttactgtttctttttctttgatcatgactgtgtttggcttttgtagtttccacagtttgtaattgttaccaaaacctcttgttacag
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AGCAAACAGAGTGGCAGTCGTCGTTGCAAACGAATGGAAGGATGCAAACGACAAGGTCATGCCCGTGAAACAATGGCTTGAAGAGAGGAGATTCATGCAGgtgcgtgcgt--acgttgtgtgtgcgtgtgtgttt---cttccattcggcctaactaagtgcgtgtccttgtcag---------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161719957|gb|FC067712.1|FC067712EST: ACAAGGTGATGCCCGTAAAACAATGGCTAGAGGAACGGCGATTCTTGCAA GGGGAAATGCAGCAACTCAGGGACAAGCTTGCTATAACGGAAAGAACTGCA
genomic: ACAAGGTGATGCCCGTAAAACAATGGCTAGAGGAACGGCGATTCTTGCAAgtaaatactc ... cttgttacagGGGGAAATGCAGCAACTCAGGGACAAGCTTGCTATAACGGAAAGAACTGCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGCAAACAGGGTGGCAGTAGTTGTAGCAAATGAATGGAAAGATGCTAATGACAAGGTGATGCCCGTAAAACAATGGCTAGAGGAACGGCGATTCTTGCAAgtaaatactctgaagttcttattgtttcaaaacttgagctattatttactgtttctttttctttgatcatgactgtgtttggcttttgtagtttccacagtttgtaattgttaccaaaacctcttgttacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA