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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACTTCCTGAAAGATCGTATGGTGCTGATTGCCGCATTTATGTGCCTGAAAATCCAACCAGCAGGTTTAAGAATGTTTATgtatgatttctcacaatccattcacttcaaaattgtttgtgtatgttccactgttcctgacatacatcaatatgatattgggaggcaagacttctgattttttctgttgtttctag

Basic information

species Vitis vinifera
transcript Vv01s0011g04370.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0011g04370.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: LOC_Os01g02890.1 (Oryza sativa), 5'ss of exon 6
AACTTCCTGAAAGATCGTATGGTGCTGATTGCCGCATTTATGTGCCTGAAAATCCAACCAGCAGGTTTAAGAATGTTTATgtatgatttctcacaatccattcacttcaaaattgt-ttgtgtatgttccactgttcctgacatacatcaatatgatattgg-gaggca--agacttctgatttt--ttctgttgtttctag---
|| | ||||||||||| |||||  | || |||||||| ||||| |||||  |||| |  ||||||||||| ||||||||||||||| | |   ||  | | |  ||||    || | || | | || |  ||  ||        |  ||   |   | |||| || ||   |   | |||||||   |   | | | |||||   
AATTACCTGAAAGATCTTATGGAACCGACTGCCGCATATATGTACCTGATCATCCGAAAAGCAGGTTTAACAATGTTTATgtatgactccattca-ccaacttgcttctcctttttgttctatttgatttacc-ttaaaactccagttctgcaaagtcttggagatgcttcaagttactgatttgaatataggtttctctaggag

upper sequence: Vv01s0011g04370.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G110834_T02 (Zea mays), 5'ss of exon 6
AACTTCCTGAAAGATCGTATGGTGCTGATTGCCGCATTTATGTGCCTGAAAATCCAACCAGCAGGTTTAAGAATGTTTATgtatgat--ttctcacaatccattcactt-caaaattgtttgtgtatgttccac---tgttcctgac-ataca---tcaatatgatattgggaggcaagacttctgatttt--ttctgttgtttctag
|| | ||||||||||| |||||  ||||||||||||| ||||| |||||  |||| |  ||||||||||| ||||||||||||||||   |      | | |   |||| |    |||||    |  ||| | |   |  |  |||| |  ||   |  |      |||  |   ||||  | |||||||   |   ||| |||||||
AATTACCTGAAAGATCATATGGAACTGATTGCCGCATATATGTACCTGACCATCCGAAAAGCAGGTTTAACAATGTTTATgtatgatgacttcattcaccgacctactttcctttttgttcaatttcgtttctcatatacttttgactaagcactcttgactattcattatgcttcaag-ttactgatttgaatatagttttttctag

upper sequence: Vv01s0011g04370.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G095757_T02 (Zea mays), 5'ss of exon 6
AACTTCCTGAAAGATCGTATGGTGCTGATTGCCGCATTTATGTGCCTGAAAATCCAACCAGCAGGTTTAAGAATGTTTATgtatgat--ttctcacaatccattcactt-caaaattgtttgtgtatgttccac---tgttcctgacatacatcaatatgatattgggaggca----agacttctgatttt--ttctgttgtttctag
|| | ||||||||||| |||||  ||||||| ||||| ||||| |||||  ||||||  ||||||||||| ||||||||||||||||   |      | | | | |||| |    |||||    |  ||| | |   |  | ||||| ||        |||   |   |  |     |   | |||||||   |   ||| |||||||
AATTGCCTGAAAGATCTTATGGAACTGATTGTCGCATATATGTCCCTGATCATCCAAAAAGCAGGTTTAACAATGTTTATgtatgatgacttcattcaccaacttactttcctttttgttcaatttcgtttctcatatacttctgac-taagcagtcttgactattcaatacgcttcaagttactgatttgaatatagttttttctag

upper sequence: Vv01s0011g04370.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA10G41430.1 (Glycine max), 5'ss of exon 7
AACTTCCTGAAAGATCGTATGGTGCTGATTGCCGCATTTATGTGCCTGAAAATCCAACCAGCAGGTTTAAGAATGTTTATgtatgatttct--cacaatccattcacttcaaaattgtttgtgtatgttccactgttcctgacatacatca-atatgatattgggaggcaagacttctgattttttctgttgtttctag
||||||| |||||||| ||||| ||||| || || || ||| |||||||||| ||  | ||||||||||||||||||||||||||||||||  ||||| |  |    ||    ||| | |    |  |     ||||| |  | |  |||| || ||  | |   | |   | ||| |   || |  |    |||  ||
AACTTCCAGAAAGATCTTATGGCGCTGACTGTCGTATATATCTGCCTGAAAACCCTGCAAGCAGGTTTAAGAATGTTTATgtatgatttctttcacaacctttgtttttgcctattctctcctaaaatagttttgttctttgctt-tatcatatttggaaataacatg--gggcttatatattatgtttcatttttcag

upper sequence: Vv01s0011g04370.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA20G25830.2 (Glycine max), 5'ss of exon 9
AACTTCCTGAAAGATCGTATGGTGCTGATTGCCGCATTTATGTGCCTGAAAATCCAACCAGCAGGTTTAAGAATGTTTATgtatgatttct--cacaatccattcacttcaaaattgtttgtgtatgttccactgttcctgacatacatcaatatgatattgggaggcaagacttctgattttttctgttgtttctag
||||||| || ||||| ||||| ||||| || || || ||| |||||||||| ||  | ||||||||||||||||||||||||||||||||  ||||| | ||    ||    ||| | |    |  ||    ||||| |  | |  |||| |||     |   |     | ||  |   || | ||     ||  ||
AACTTCCAGAGAGATCTTATGGCGCTGACTGTCGTATATATCTGCCTGAAAACCCTGCAAGCAGGTTTAAGAATGTTTATgtatgatttctttcacaacctatgtttttgcttattctctcctaaaattattttgttcttcgctt-tatca-tatttggatataacatggggctgatatattatgcttcatctttcag

upper sequence: Vv01s0011g04370.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT1G15110.1 (Arabidopsis thaliana), 5'ss of exon 7
AACTTCCTGAAAGATCGTATGGTGCTGATTGCCGCATTTATGTGCCTGAAAATCCAACCAGCAGGTTTAAGAATGTTTATgtatgat-ttctcacaatccattcacttcaaaattgtttgtgtatgttccactgttcctgacatacatcaatatgatattgggaggcaagacttctgattttttctgttgtttctag
|||||||||| | ||| || |||||||||||||| || |||||||||||  | ||||| | ||||||||||||| |||||||| | | |  || |||    | | ||| |   |        |   |  |||          || | |  ||   |  ||   ||                                
AACTTCCTGAGAAATCATACGGTGCTGATTGCCGTATATATGTGCCTGATCACCCAACAAACAGGTTTAAGAATCTTTATgtagggtatcttctcaacaactcccctttaccttaaccaaccttcatatcacctaaaggcttatgctttgattaaaatttatcag--------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349828936|gb|FQ419269.1|FQ419269
EST:     GCCGCATTTATGTGCCTGAAAATCCAACCAGCAGGTTTAAGAATGTTTAT                         GAAACCCTTTTTGATGAATTTGTTGTGGCTCATATATNTGGATGGTGGGGT
genomic: GCCGCATTTATGTGCCTGAAAATCCAACCAGCAGGTTTAAGAATGTTTATgtatgatttc ... ttgtttctagGAAACCCTTTTTGATGAATTTGTTGTGGCTCATATATTTGGATGGTGGGGT