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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCACAGGCATCTTGTTGAGAAGATTACTGGTTGATAGGAATTTGAAGGGCGTAACTCATGTTATTGTTGATGAAATTCATGAGCGTGGAATGAATGAAGgtaaaatgtggacttgatgttctgtttttccttgagaagaggaaatgtgatttcttaccatgatacatgtttgattccag

Basic information

species Vitis vinifera
transcript Vv01s0011g04360.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0011g04360.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: LOC_Os01g02884.1 (Oryza sativa), 5'ss of exon 1
ACCACAGGCATCTTGTTGAGAAGATTACTGGTTGATAGGAATTTGAAGGGCGTAACTCATGTTATTGTTGATGAAATTCATGAGCGTGGAATGAATGAAGgtaaaatgtggacttgatgttctgtttttccttgagaagaggaaatgtgatttcttaccatgatacatg-tttgattccag-----------------------
|| || ||  |  ||||| | ||||| ||||| ||||| |||||||| || || || |||||||||||||||||||| ||||||||||| ||||||||||||      | | | | |  |     |    ||  |    |  |  | |   |    ||   | || | | ||| || |                          
ACTACTGGAGTTCTGTTGCGGAGATTGCTGGTGGATAGAAATTTGAAAGGTGTTACCCATGTTATTGTTGATGAAATCCATGAGCGTGGCATGAATGAAGgtctgcaatcgtcataaaata--aataaatctgcattcaaaaagttatagctagacactcaggtagacgatttcatgctgaatatttttgtatttttgtgctag

upper sequence: Vv01s0011g04360.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G373175_T02 (Zea mays), 5'ss of exon 7
ACCACAGGCATCTTGTTGAGAAGATTACTGGTTGATAGGAATTTGAAGGGCGTAACTCATGTTATTGTTGATGAAATTCATGAGCGTGGAATGAATGAAGgtaaaatgtggac---ttgatgttctgtttttccttgagaaga--ggaaatgtgatttcttaccatgatacatgtttgattccag----------------
||||| ||  || ||||| | |||||  |||| || ||||||||||| || || || |||||||||||||||||||| |||||  | || ||||||||||||      | | |    | || |||  ||  | ||  | | |    | |||||  |   ||      ||  ||| |    |                    
ACCACTGGAGTCCTGTTGCGGAGATTGTTGGTGGACAGGAATTTGAAAGGTGTTACCCATGTTATTGTTGATGAAATCCATGAAAGAGGCATGAATGAAGgtctgcattagtcatacttattttcatttagtactaaaaatgtttagcaatgtactcatttttgtaaatttatgctaatcttttttgtgtctttgtgctag

upper sequence: Vv01s0011g04360.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA09G18490.1 (Glycine max), 5'ss of exon 2
ACCACAGGCATCTTGTTGAGAAGATTACTGGTTGATAGGAATTTGAAGGGCGTAACTCATGTTATTGTTGATGAAATTCATGAGCGTGGAATGAATGAAGgtaaaatg-tggacttgatgttctgtttttccttgagaagaggaaatgtgatttcttaccatgatacatgtttg-attccag
|||||||||||||| || ||||||||||| | |||||| || || |  || ||||||||| |||||||||||||||||||||||||||||||||||||||||| | |  || |||||||  | | |||    || ||||||     | ||||    | |  |   |  | ||||  |  |||
ACCACAGGCATCTTATTAAGAAGATTACTAGATGATAGAAACTTAATAGGTGTAACTCATATTATTGTTGATGAAATTCATGAGCGTGGAATGAATGAAGgtagatttctgaacttgattgtgtctttgatatttagaagattttttatgataa--tgcttttgcatttttttgtgtgacag

upper sequence: Vv01s0011g04360.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA20G25800.1 (Glycine max), 5'ss of exon 10
ACCACAGGCATCTTGTTGAGAAGATTACTGGTTGATAGGAATTTGAAGGGCGTAACTCATGTTATTGTTGATGAAATTCATGAGCGTGGAATGAATGAAGgtaaaatgt-ggacttgatgttctgtttttccttgagaagaggaaatgtgatttcttaccatgatacatgtttgattccag
||||||||||| || || ||||||||||| | |||||| || || || |||||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||| | |  ||| ||    |  ||||| || |||| |     | | | |  | |   |  | ||| |||  |  |||
ACCACAGGCATTTTATTAAGAAGATTACTAGCTGATAGAAAGTTAAAAGGCGTAACTCATGTTATTGTGGATGAAATTCATGAGCGTGGGATGAATGAAGgtagaattttgagcttcattgaatcattttcttttagaacatt---tctaaatattcatattcttgcattttttgtgacag

upper sequence: Vv01s0011g04360.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT2G01130.1 (Arabidopsis thaliana), 5'ss of exon 7
ACCACAGGCATCTTGTTGAGAAGATTACTGGTTGATAGGAATTTGAAGGGCGTAACTCATGTTATTGTTGATGAAATTCATGAGCGTGGAATGAATGAAGgtaaaatgtggacttgatgtt------ctgtttttccttgagaagaggaaatgt-gatttcttaccatgatacatgtttgattccag
||||||||||| ||||||||| | ||  |||| ||||| ||||| |  || || ||||||||||| || ||||||||||||||||||||||||||||||||||   | |    ||| | |       ||  |  |  ||      |    || | | | |||||| ||  ||| | | | |||  ||
ACCACAGGCATTTTGTTGAGACGCTTGTTGGTAGATAGAAATTTAAGAGGAGTTACTCATGTTATCGTGGATGAAATTCATGAGCGTGGAATGAATGAAGgtatg-tatacttttgctatcaagcagctcctcatttttagcttaacttgatttaggtgtcttactatattacttttgt-attttag