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TTCATTTGGGCAGTGAGTATAGCACAATCACGATGCATAAACATGCAAATGAGGATTGGTGCACTAGTTCAAGATGCAAATATGCTAATTCCTTATGCTGgtgagtttttcgcacctaaattcttgtttattacattgagtaatattttatcaccaataaaacaaaaccttattacctcatgtgtatgtctggagttgag...
species | Vitis vinifera |
transcript | Vv01s0011g01080.t01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GAGGATTGGTGCACTAGTTCAAGATGCAAATATGCTAATTCCTTATGCTG ACATGCTAAACCATTCCTTTCAGCCAAATTGTTTCTTTCATTGGCGTTTCAEST: gi|30325264|gb|CD008526.1|CD008526
genomic: GAGGATTGGTGCACTAGTTCAAGATGCAAATATGCTAATTCCTTATGCTGgtgagttttt ... tatttcgcagACATGCTAAACCATTCCTTTCAGCCAAATTGTTTCTTTCATTGGCGTTTCA
EST: GAGGATTGGTGCACTAGTTCAAGATGCAAATATGCTAATTCCTTATGCTG ACATGCTAAACCATTCCTTTCAGCCAAATTGTTTCTTTCATTGGCGTTTCAEST: gi|32248332|gb|CD714151.1|CD714151
genomic: GAGGATTGGTGCACTAGTTCAAGATGCAAATATGCTAATTCCTTATGCTGgtgagttttt ... tatttcgcagACATGCTAAACCATTCCTTTCAGCCAAATTGTTTCTTTCATTGGCGTTTCA
EST: GAGGATTGGTGCACTAGTTCAAGATGCAAATATGCTAATTCCTTATGCTG ACATGCTAAACCATTCCTTTCAGCCAAATTGTTTCTTTCATTGGCGTTTCAEST: gi|30328160|gb|CD011422.1|CD011422
genomic: GAGGATTGGTGCACTAGTTCAAGATGCAAATATGCTAATTCCTTATGCTGgtgagttttt ... tatttcgcagACATGCTAAACCATTCCTTTCAGCCAAATTGTTTCTTTCATTGGCGTTTCA
EST: GAGGATTGGTGCACTAGTTCAAGATGCAAATATGCTAATTCCTTATGCTG ACATGCTAAACCATTCCTTTCAGCCAAATTGTTTCTTTCATTGGCGTTTCAEST: gi|32247267|gb|CD713086.1|CD713086
genomic: GAGGATTGGTGCACTAGTTCAAGATGCAAATATGCTAATTCCTTATGCTGgtgagttttt ... tatttcgcagACATGCTAAACCATTCCTTTCAGCCAAATTGTTTCTTTCATTGGCGTTTCA
EST: GAGGATTGGTGCACTAGTTCAAGATGCAAATATGCTAATTCCTTATGCTG ACATGCTAAACCATTCCTTTCAGCCAAATTGTTTCTTTCATTGGCGTTTCA
genomic: GAGGATTGGTGCACTAGTTCAAGATGCAAATATGCTAATTCCTTATGCTGgtgagttttt ... tatttcgcagACATGCTAAACCATTCCTTTCAGCCAAATTGTTTCTTTCATTGGCGTTTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCATTTGGGCAGTGAGTATAGCACAATCACGATGCATAAACATGCAAATGAGGATTGGTGCACTAGTTCAAGATGCAAATATGCTAATTCCTTATGCTGgtgagtttttcgcacctaaattcttgtttattacattgagtaatattttatcaccaataaaacaaaaccttattacctcatgtgtatgtctggagttgag
- - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aataaaa