Sequence
atgc intronic sequence ATGC exonic sequenceGGCTCAAACCTGGACAGCAATGCTAAAATGTGGCGATTGGTTGCAGATCTGATGAATGATCTTGgtatgcactcattttttcttattttagatttgacttttaaaacaagtgattaatttgaatcatcatttggatgattaaattggtaaccctttagggagtt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0011g00500.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: LOC_Os03g11500.1 (Oryza sativa), 5'ss of exon 7
GGCTCAAACCTGGACAGCAATGCTAAAATGTGGCGATTGGTTGCAGATCTGATGAATGATCTTGgta-tgcactcattttttcttattttagatttga--cttttaaaacaagtgattaatttgaatcatcatttggatgattaaattggtaaccctttagggagtt
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GGATCTAACCTTGATAGCAATGCTAAAATGTGGCGCCTAGTTGCAGACTTTATGAATGACCTTGgtaatatagtctatatcagtaatcgctgtattaattctttgaatgcgggcgtctaatttaaag-gtcctgcaatcgtttggtatttatattcaagactaag--
upper sequence: Vv01s0011g00500.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA02G13010.1 (Glycine max), 5'ss of exon 3
GGCTCAAACCTGGACAGCAATGCTAAAATGTGGCGATTGGTTGCAGATCTGATGAATGATCTTGgt--atgcactcattttt-tcttattttagatttgacttttaaaacaagtgattaatttgaatcatcatttggatgattaaattggtaaccctttagggagtt
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GGATCAAATCTTGATAGCTATGCAAAAATGTGGCGATTGGTTGCAGATCTTATGAATGACCTTGgtagattctttcacattcatctttttcaaaaaaataaaatcaaattatgctgccattttctaccttcagtctaaatagtgtatcttt---ccatgatgctgct
upper sequence: Vv01s0011g00500.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA01G07190.1 (Glycine max), 5'ss of exon 7
GGCTCAAACCTGGACAGCAATGCTAAAATGTGGCGATTGGTTGCAGATCTGATGAATGATCTTGgt--atgcactcattttttcttattttagatttgacttttaaaacaagtgattaatttgaatcatcatt-----tggatgattaaattggtaaccctttagggagtt
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GGATCAAATCTTGATAGCAATGCAAAAATGTGGCGATTGGTTGCAGATCTTATGAATGACCTAGgtagattctttcacattcatctttttcaaaaaataaaataaaattatactgccattttctaccttcagtcccaatagtgtatcaaatttgaaatgctttt-------
upper sequence: Vv01s0011g00500.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT1G13770.1 (Arabidopsis thaliana), 5'ss of exon 7
GGCTCAAACCTGGACAGCAATGCTAAAATGTGGCGATTGGTTGCAGATCTGATGAATGATCTTGgtatgcactcattttttcttattttagatttgacttttaaaacaagtgattaatttgaatcatcatttggatgattaaa---ttggtaaccctttagggagtt
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GGTTCCAACCTGGATAGCAATGCAAAAATGTGGCGCCTAGTTGCTGACCTTATGAATGATATTGgtatgtaaaagttagttgtcacatcacacttgatactaattgcctgtatttggttc------tcagttgaatgactacaagctttgttgcttttattgcag--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161708215|gb|FC057847.1|FC057847EST: CAGCAATGCTAAAATGTGGCGATTGGTTGCAGATCTGATGAATGATCTTG GGATGTTAATGGATCTTGTTTCTCCTTTGTTCCCTTCAGCATTTGTGTTCA
genomic: CAGCAATGCTAAAATGTGGCGATTGGTTGCAGATCTGATGAATGATCTTGgtatgcactc ... ttggttgcagGGATGTTAATGGATCTTGTTTCTCCTTTGTTCCCTTCAGCATTTGTGTTCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGCTCAAACCTGGACAGCAATGCTAAAATGTGGCGATTGGTTGCAGATCTGATGAATGATCTTGgtatgcactcattttttcttattttagatttgacttttaaaacaagtgattaatttgaatcatcatttggatgattaaattggtaaccctttagggagtt
- - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaacaa