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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATAATGACTGGACCTGTCCTAAATGTGGAAATGTCAACTTCTCTTTTAGAACTGTTTGTAACATGAGGAAGTGCAATACACCAAAACCTGGATCACAGgtttgagcagcgtttcgtttaagaatgtagaactagattgtcatttttaatatcacagcatgaaagttttatcattcaatagccttttcttggatgttaaacttaaaaatctaacaatcaattggaatctttgtagtatgtttattactttctaataattctctcttgcaaatgcag

Basic information

species Vitis vinifera
transcript Vv01s0010g03700.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0010g03700.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: LOC_Os08g41010.4 (Oryza sativa), 5'ss of exon 7
TGATAATGACTGGACCTGTCCTAAATGTGGAAATGTCAACTTCTCTTTTAGAACTGTTTGTAACATGAGGAAGTGCAATACACCAAAACCTGGATCACAGgtttgag-cagcgtttcgtttaagaatgtagaactagat---tgtcatttttaatatcacagcatgaaagttttatcattcaatagccttttcttggatgttaaacttaaaaatctaacaatcaattggaatctttgtagtatgtttattactttctaataattctctcttgcaaatgcag
||||||||| ||||  || ||||| ||    ||  | |||||  | ||  | || || ||||||||||| |||||||||||||||| ||||| |   |||||   |  |  |  ||| | ||    || |       |    |   |||  || ||  | |  ||||||  | | || ||| |||    |    | | |                                                                                  
TGATAATGATTGGAAATGCCCTAATTGCAACAACATTAACTTTGCATTCCGGACAGTCTGTAACATGAGAAAGTGCAATACACCAAGACCTGAAAACCAGgtacaattctccacttcttgtacttgtgcaagttcccacctattgtattactactactaaattatgaaatatctttctttctataaatctaaaattggtc---------------------------------------------------------------------------------

upper sequence: Vv01s0010g03700.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA11G36990.3 (Glycine max), 5'ss of exon 7
TGATAATGACTGGACCTGTCCTAAATGTGGAAATGTCAACTTCTCTTTTAGAACTGTTTGTAACATGAGGAAGTGCAATACACCAAAACCTGGATCACAGgtttgagcagcgtttcgtttaagaatgtagaactagattgtcatttttaatatcacagcatgaaagttttatcattcaatagccttttcttggatgttaaacttaaaaatctaacaatcaattggaatctttgtagtatgtttattactttctaataattctctcttgcaaatgcag
||| ||||||||||| ||||| |||||||| |||||||| || || || |||||||| || |||||||| |||||||| ||||| ||||||||||||||||| ||  | |  |||  ||  |   || | |      | || |||| | | ||    |  | |   |||||| ||  || |   ||   ||   |||| ||| |     | |||   |   ||   ||  ||| | | ||  | |        |                       
TGACAATGACTGGACATGTCCAAAATGTGGCAATGTCAATTTTTCATTCAGAACTGTCTGCAACATGAGAAAGTGCAACACACCCAAACCTGGATCACAGgtctg--ctgtctttatttctattttgcata------tcgtgatttgtga-attttggt-taacttttttataatggaaaaaatttcatttac-tgtttaacatttttttttaaatgt---ttaacattgttgga-tgtgaatgtcgggccgcag----------------------

upper sequence: Vv01s0010g03700.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA18G00920.2 (Glycine max), 5'ss of exon 7
TGATAATGACTGGACCTGTCCTAAATGTGGAAATGTCAACTTCTCTTTTAGAACTGTTTGTAACATGAGGAAGTGCAATACACCAAAACCTGGATCACAGgtttgagcagcgtttcgtttaagaatgtagaactagattgtcatttttaatatcacagcatgaaagttttatc-attcaatagccttttcttggatgttaaacttaaaaatctaacaatcaattggaatctttg-tagtatgtttattactttctaataattctctcttgcaaatgcag
||| ||||||||||| ||||| |||||||| |||||||| || || || |||||| | || |||||||| |||||||| ||||| ||||||||||| ||||| ||  | || |||  ||  |   || | |    ||||   ||||||  ||| |  | |  ||| ||  ||  | |   || | |||| ||   | ||||  || || ||       |  ||  |||| | ||   | |                                       
TGACAATGACTGGACATGTCCAAAATGTGGCAATGTCAATTTTTCATTCAGAACTATCTGCAACATGAGAAAGTGCAACACACCCAAACCTGGATCCCAGgtctg--ctgcctttatttctattgtgcatattgtgattaa-attttt--tatgatggaaaaaaaattccatttactgtctaactttttttttctttttaatgtttaacatt----gttggatgtgaatgtctggccgcag--------------------------------------

upper sequence: Vv01s0010g03700.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT1G67325.1 (Arabidopsis thaliana), 5'ss of exon 7
TGATAATGACTGGACCTGTCCTAAATGTGGAAATGTCAACTTCTCTTTTAGAACTGTTTGTAACATGAGGAAGTGCAATACACCAAAACCTGGATCACAGgtttgagcagcgttt-----cgtttaagaat---gtagaactagattg----tcatttttaatatcacagcat--gaaagttt---tatcattcaatagccttttcttggatgttaaacttaaaaatctaacaatcaattggaatctttgtagtatgtttattactttctaataattct-ctcttgcaaatgcag---
 |||||||| ||||| ||||| || ||||| ||||| |||||||| || |||||||| |||||||||||||||||||| || ||||| ||||| || |||||||| || || |||      |||| |   |   ||||| | |   |     | ||| | ||    |  |||   |  | ||    ||||||  || ||| |  |     |     |  |   | ||     | |    | || |||| | | ||| ||| ||  ||||| |   ||   |||||  || |||||   
CGATAATGATTGGACATGTCCGAATTGTGGTAATGTAAACTTCTCATTCAGAACTGTATGTAACATGAGGAAGTGCAACACTCCAAAGCCTGGTTCTCAGgtttgtgctgcttttttttgtgtttgactgtcccgtagagcgaacatatacattattgtgaactctagggcactggttaattcagatatcataaaacagcttgcttaattaatcgtagttcgtagatggcttacttggataga-tcttgggattat-tttcttgatttctgacctttaaactcttctaattgcagcag

upper sequence: Vv01s0010g03700.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT1G67325.2 (Arabidopsis thaliana), 5'ss of exon 8
TGATAATGACTGGACCTGTCCTAAATGTGGAAATGTCAACTTCTCTTTTAGAACTGTTTGTAACATGAGGAAGTGCAATACACCAAAACCTGGATCACAGgtttgagcagcgtttc-----gtttaagaat---gtagaactagattgt----catttttaatatcacagcat--gaaagttt---tatcattcaatagccttttcttggatgttaaacttaaaaatctaacaatcaattggaatctttgtagtatgtttattactttctaataattct-ctcttgcaaatgcag
 |||||||| ||||| ||||| || ||||| ||||| |||||||| || |||||||| |||||||||||||||||||| || ||||| ||||| || |||||||| || || |||      |||| |   |   ||||| | |   | |     ||| | ||    |  |||   |  | ||    ||||||  || ||| |  |     |     |  |   | ||     | |    | || |||| | | ||| ||| ||  ||||| |   ||   |||||  || |||||
CGATAATGATTGGACATGTCCGAATTGTGGTAATGTAAACTTCTCATTCAGAACTGTATGTAACATGAGGAAGTGCAACACTCCAAAGCCTGGTTCTCAGgtttgtgctgcttttttttgtgtttgactgtcccgtagagcgaacatatacattattgtgaactctagggcactggttaattcagatatcataaaacagcttgcttaattaatcgtagttcgtagatggcttacttggataga-tcttgggattat-tttcttgatttctgacctttaaactcttctaattgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349808005|gb|FQ402396.1|FQ402396
EST:     GAACTGTTTGTAACATGAGGAAGTGCAATACACCAAAACCTGGATCTCAG                         GCTGCAAAATCTGAGAAGAATTCTA
genomic: GAACTGTTTGTAACATGAGGAAGTGCAATACACCAAAACCTGGATCACAGgtttgagcag ... gcaaatgcagGCTGCAAAATCTGAGAAGAATTCTA
EST: gi|349815268|gb|FQ400423.1|FQ400423
EST:     GAACTGTTTGTAACATGAGGAAGTGCAATACACCAAAACCTGGATCTCAG                         GCTGCAAAATCTGAGAAGAATTCTA
genomic: GAACTGTTTGTAACATGAGGAAGTGCAATACACCAAAACCTGGATCACAGgtttgagcag ... gcaaatgcagGCTGCAAAATCTGAGAAGAATTCTA
EST: gi|110381005|gb|EC946312.1|EC946312
EST:     GAACTGTTTGTAACATGAGGAAGTGCAATACACCAAAACCTGGATCACAG                         GCTGCAAAATCTGAGAAGAATTCTA
genomic: GAACTGTTTGTAACATGAGGAAGTGCAATACACCAAAACCTGGATCACAGgtttgagcag ... gcaaatgcagGCTGCAAAATCTGAGAAGAATTCTA