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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATTCAAGATGCTCATAATCTTGCCTGGAAATTAGCTTCTCTTGTGAAGGGTATTGCACCATCTTCAATTCTTCACACTTATGATACAGAACGTAGACCGgtattgcttttattcttttcttgtacttgggttgcacctggttcttagcatcctcctatccataactttctatttttttatctgtccagaaattggtctttcatacttttccctgttgttcccattatgttcttgttaaaacttagacactttgatgagttttattttgttgctgtcag

Basic information

species Vitis vinifera
transcript Vv01s0010g02570.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0010g02570.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA18G01240.1 (Glycine max), 5'ss of exon 7
TATTCAAGATGCTCATAATCTTGCCTGGAAATTAGCTTCTCTTGTGAAGGGTATTGCACCATCTTCAATTCTTCACACTTATGATACAGAACGTAGACCGgtattgcttttattcttttcttgtacttgggttgcacctggttcttagcatcctcctatccataactttctatttttttatctgtccagaaattggtctttcatacttttccctgttgttcccattatgttcttgttaaaacttagacactttgatgagttttattttgttgctgtcag
 ||||| ||||| |||||||||||||||||| | |||||| |  | ||||||||||| ||| ||||| | ||  | || || || |   |||||| ||||||| || |||||| ||  | ||  | ||   ||  |     |  |||   |  |  ||   ||||| |  |     ||||| | ||   |   | |||                                                                                 
CATTCAGGATGCCCATAATCTTGCCTGGAAAATTGCTTCTGTGATTAAGGGTATTGCCCCAACTTCAGTGCTAAATACCTACGAAATCAAACGTAAACCGgtagtgtttttat-ctcctgttaaattt---ttttaatgtatatttatattgatgttag--ataacctcattgacatttatttctctctattattgtcag-------------------------------------------------------------------------------

upper sequence: Vv01s0010g02570.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT1G24340.1 (Arabidopsis thaliana), 5'ss of exon 7
TATTCAAGATGCTCATAATCTTGCCTGGAAATTAGCTTCTCTTGTGAAGGGTATTGCACCATCTTCAATTCTTCACACTTATGATACAGAACGTAGACCGgtattgcttttattcttttcttgtacttgggttgcacctggttcttagcatcctcctatccataactttctatttttttatctgtccagaaattggtctttcatacttttccctgttgttcccattatgttcttgttaaaacttagacactttgatgagttttattttgttgctgtcag
 ||||| ||||||||||||||||| |||||| ||||  |||||||  |||||  ||||   |||||||||||| | |||||||| ||||||||||| ||||||  |    ||||| | | || ||  |   |    ||    | |   | |      || ||| |     ||| || || |   | |                                                                                            
AATTCAGGATGCTCATAATCTTGCATGGAAAATAGCAGCTCTTGTTCAGGGTTCTGCAAACTCTTCAATTCTTAAAACTTATGAAACAGAACGTAGGCCGgtacgg----tattcatcttttataactttttcttgccatcctttcctcctaacttgattcattaacacatatcttattgtgactgctag-----------------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161718405|gb|FC065028.1|FC065028
EST:     GTATTGC-CCATCTTCAATTCT-C-CACTTACGATACAGA-CGTAGACCG                         AT-GC-ATTTTCA-TACTGA
genomic: GTATTGCACCATCTTCAATTCTTCACACTTATGATACAGAACGTAGACCGgtattgcttt ... ttgctgtcagATTGCCATTTTCAATACTGA