Sequence
atgc intronic sequence ATGC exonic sequenceGGTAAAATGTGTTGGGGAGCAGCTCCAGTTGGAAGGTTCATATAGTCCTCGTACTTACATAGAACAAATTCAGCTCGAAAAGCTTGTAAATGAAGTTATGgtagggcagcctccaaaatttatgatgccttatcctacgttggtaatcctgatctgatcattccacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0010g01080.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA02G14110.1 (Glycine max), 5'ss of exon 8
GGTAAAATGTGTTGGGGAGCAGCTCCAGTTGGAAGGTTCATATAGTCCTCGTACTTACATAGAACAAATTCAGCTCGAAAAGCTTGTAAATGAAGTTATGgtagggcagcctccaaaatttatgatgccttatcctacgttggtaatcctgatctgatcattccacag
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TCTAAAATATATAGGAGAACAGCTGGGTCTAGAAGGTTCCTACATTCCTCGTACCTACATTGAGCAAATTCAAATTGAAAAGCTTGTGAATGAGGTTATGgtatgactgcttcccatcagc-taatatgttttcctgtgtcatcattttctgtctaactgttccacag
upper sequence: Vv01s0010g01080.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA01G09660.1 (Glycine max), 5'ss of exon 8
GGTAAAATGTGTTGGGGAGCAGCTCCAGTTGGAAGGTTCATATAGTCCTCGTACTTACATAGAACAAATTCAGCTCGAAAAGCTTGTAAATGAAGTTATGgtagggcagcctccaaaatttatgatgccttatcctacgttggtaatcctgatctgatcattccacag
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TCTAAAATACATAGGAGAACAGCTGGGTATAGAAGGTTCCTACATTCCTCGTACCTACATTGAGCAAATTCAAATTGAAAAGCTTGTGAATGAGGTTATGgtacgacagcttcccatcagc-taatatgttttcctgtgtcaacattttctgtctaactgttccacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71869242|gb|DT018297.1|DT018297EST: GTACTTACATAGAACAAATTCAGCTCGAAAAGCTTGTAAATGAAGTTATG GCATTGCCAGATTATTTGAAGACAAAGCTTAGTATAGATGAGGATATGGTT
genomic: GTACTTACATAGAACAAATTCAGCTCGAAAAGCTTGTAAATGAAGTTATGgtagggcagc ... cattccacagGCATTGCCAGATGATTTGAAGACAAAGCTTAGTATAGATGAGGATATGGTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGTAAAATGTGTTGGGGAGCAGCTCCAGTTGGAAGGTTCATATAGTCCTCGTACTTACATAGAACAAATTCAGCTCGAAAAGCTTGTAAATGAAGTTATGgtagggcagcctccaaaatttatgatgccttatcctacgttggtaatcctgatctgatcattccacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC