1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TGTTCAACTGCCCGGATCCAGTGATCCCAGTTACCTTTTATTGGGGATGCCTGACCACGAAATATGAAGTAATTTCAGCATCTCCTAGAGCATTGCTTTTgtatgtatcattcacccagtactctttatcttatattaataaacttattttcttcatgattgtttctattaaggaaatccttatgatggttctcttggtttatccaaccaaatagatccttttaacattccaatgggaatgtatgggactgcatttgcttattccatctactttttgctcttacag
species | Vitis vinifera |
transcript | Vv01s0010g00580.t01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CTGACCGCGAAATATGAAGTAATTTCAGCATCTCCTAGAACATTGCTTTT AAGGTGCTCATAACAAGCATGCAAGAGATTCTGGTACATTTTTTAGAGGAAEST: gi|110361414|gb|EC924882.1|EC924882
genomic: CTGACCACGAAATATGAAGTAATTTCAGCATCTCCTAGAGCATTGCTTTTgtatgtatca ... gctcttacagAAGGTGCTCATAACAAGCATGCAAGAGATTCTGGTACATTTTTTGGAGGAA
EST: CTGACCGCGAAATATGAAGTAATTTCAGCATCTCCTAGAGCATTGCTTTT AAGGTGCTCATAACAAGCATGCAAGAGATTCTGGTACATTTTTTGGAGGAAEST: gi|349830142|gb|FQ420402.1|FQ420402
genomic: CTGACCACGAAATATGAAGTAATTTCAGCATCTCCTAGAGCATTGCTTTTgtatgtatca ... gctcttacagAAGGTGCTCATAACAAGCATGCAAGAGATTCTGGTACATTTTTTGGAGGAA
EST: CTGACCACGAAATATGAAGTAATTTCAGCATCTCCTAGAGCATTGCTTTT AAGGTGCTCATAACAAGCATGCAAGAGATTCTGGTACATTTTTTGGAGGAAEST: gi|110363854|gb|EC927477.1|EC927477
genomic: CTGACCACGAAATATGAAGTAATTTCAGCATCTCCTAGAGCATTGCTTTTgtatgtatca ... gctcttacagAAGGTGCTCATAACAAGCATGCAAGAGATTCTGGTACATTTTTTGGAGGAA
EST: CTGACCGCGAAATATGAAGTAATTTCAGCATCTCCTAGAGCATTGCTTTT AAGGTGCTCATAACAAGCATGCAAGAGATTCTGGTACATTTTTTGGAGGAA
genomic: CTGACCACGAAATATGAAGTAATTTCAGCATCTCCTAGAGCATTGCTTTTgtatgtatca ... gctcttacagAAGGTGCTCATAACAAGCATGCAAGAGATTCTGGTACATTTTTTGGAGGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTTCAACTGCCCGGATCCAGTGATCCCAGTTACCTTTTATTGGGGATGCCTGACCACGAAATATGAAGTAATTTCAGCATCTCCTAGAGCATTGCTTTTgtatgtatcattcacccagtactctttatcttatattaataaacttattttcttcatgattgtttctattaaggaaatccttatgatggttctcttggtttatccaaccaaatagatccttttaacattccaatgggaatgtatgggactgcatttgcttattccatctactttttgctcttacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA