Sequence
atgc intronic sequence ATGC exonic sequenceCTGATGAGAACAACTGGCCTGGTGTTTCCAAGATCCCTTGGTATAACAATTTCAAACCAGCAAAGCCCTTAGAGAGACGTGTCAGGGAGGTTTTCAGGACgtaagtaaccaaaaattgtatttgcatatggtactgttacaagatatcagagtgagcaacatgggggtttttattttgtctaattggtttgagaaaatatgatttcataatccttgttatgtttcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0805g00020.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT5G64960.2 (Arabidopsis thaliana), 5'ss of exon 8
CTGATGAGAACAACTGGCCTGGTGTTTCCAAGATCCCTTGGTATAACAATTTCAAACCAGCAAAGCCCTTAGAGAGACGTGTCAGGGAGGTTTTCAGGACgtaagtaaccaaaaattgtatttgcatatggtactgttacaagatatcagagtgagcaacatgggggtttttattttgtctaattggtttgagaaaatatgatttcataatccttgttatgtttcag
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CTGATGAAAGCAACTGGCCTGGAGTTTCCAAGATGCCTTGGTATAACCAAATGAAATCATCTCGGCCCTTAAAGAGACGCGTAAGGGAGATCTACAGACAgtaagtat---aaaccattatgtagttgcgactcttttatgcaacagttactt---tgatccaggagatctcatttggtccttttctcttctgctatag----------------------------
upper sequence: Vv00s0805g00020.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT5G10270.1 (Arabidopsis thaliana), 5'ss of exon 9
CTGATGAGAACAACTGGCCTGGTGTTTCCAAGATCCCTTGGTATAACAATTTCAAACCAGCAAAGCCCTTAGAGAGACGTGTCAGGGAGGTTTTCAGGACgtaagtaaccaaaa--attgtatttgcatatggtactgtta-caagatatcagagtgagcaacatgggggtttttattttgtctaattggtttgagaaaatatgatttcataatccttgttatgtttcag
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CTGATGAAAAACTTTGGCCTGGGGTTTCCAAGATGCCTTGGTTCAACAATTTCAAGCCTGCACGGCCCTTGAAGAGGCGTGTAAGAGAGTTCTTCAGACAgtaagtaaagtaaaccattatatatctccgctttactttgatcagaagatttcatttggctttac-----tttctcttctgtacag--------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|87584731|gb|DY473781.1|DY473781EST: TTCAAACCAGCAAAGCCCTTAGAGAGACGTGTCAGGGAGGTTTTCAGGAC TTTTGACCGTCATGCTCTGGACTTGGTAGATAGAATGCTCACTCTTGATCC
genomic: TTCAAACCAGCAAAGCCCTTAGAGAGACGTGTCAGGGAGGTTTTCAGGACgtaagtaacc ... tatgtttcagTTTTGACCGTCATGCTCTGGACTTGGTAGATAGAATGCTCACTCTTGATCC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTGATGAGAACAACTGGCCTGGTGTTTCCAAGATCCCTTGGTATAACAATTTCAAACCAGCAAAGCCCTTAGAGAGACGTGTCAGGGAGGTTTTCAGGACgtaagtaaccaaaaattgtatttgcatatggtactgttacaagatatcagagtgagcaacatgggggtttttattttgtctaattggtttgagaaaatatgatttcataatccttgttatgtttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG