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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAACAATAAATGTTGGAGGATGCTTGCTGAATGCAATTACAATTGAGCATTTCATCTTGAGACTGCCTTATCACTTGAAATATgtaagttaaaaccatctcaagttttattaactggactgcatccttggcaaaatgtgtatcttaaattgcatggtggatttcctttttccgtcttgttactag

Basic information

species Vitis vinifera
transcript Vv00s0804g00020.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0804g00020.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA01G39120.1 (Glycine max), 5'ss of exon 9
GCAACAATAAATGTTGGAGGATGCTTGCTGAATGCAATTACAATTGAGCATTTCATCTTGAGACTGCCTTATCACTTGAAATATgtaagt-taaaaccatctc---------------------------aagttttattaactggactgcatccttggcaaaatgtgtatcttaaattgcatg--gtggatttcctttttccgtcttgttactag
||||||||| | || || ||     |||| |||||||||||||| ||||| |||||||||||||| ||||||||| |||  | |||||||  | || |  |||                           |||||||  ||| |        ||| || ||     ||||  ||| | | |||    ||  |||| | ||||| |  ||  ||   
GCAACAATAGAAGTGGGGGGGCAGCTGCTCAATGCAATTACAATAGAGCACTTCATCTTGAGACTTCCTTATCACCTGATGTTTgtaagtgcataatctactctcttgcctatgctttcagatgtctaaaaagtttttctaattttctaaagtccctgtcatgccttgtagattacaattcatcccttgattttcatctttccttactgcgacag-

upper sequence: Vv00s0804g00020.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA11G06130.1 (Glycine max), 5'ss of exon 7
GCAACAATAAATGTTGGAGGATGCTTGCTGAATGCAATTACAATTGAGCATTTCATCTTGAGACTGCCTTATCACTTGAAATATgtaagt-taaaaccatctc---------------------------aagttttattaactggactgcatccttggcaaaatgtgtatcttaaattgcatg--gtggatttcctttttccgtcttgttactag
||||||||| | || || ||      ||| |||||||||||||| ||||| |||||||||||||| ||||||||| |||  | |||||||  | || |  |||                           |||||||  ||  |        |||||| ||   | ||||  ||| | | |||    ||  |||| | ||| | || ||  ||   
GCAACAATAGAAGTGGGGGGCCTGCAGCTCAATGCAATTACAATAGAGCACTTCATCTTGAGACTTCCTTATCACCTGATGTTTgtaagtgcataatctactctcctgcctatgctttcagaggtgtaaaaagtttttctatttttcagaagtccttgtcatgctttgtagattacaattcatctcttgattttcatctttgcttcctgcgacag-

upper sequence: Vv00s0804g00020.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA17G20320.1 (Glycine max), 5'ss of exon 10
GCAACAATAAATGTTGGAGGATGCTTGCTGAATGCAATTACAATTGAGCATTTCATCTTGAGACTGCCTTATCACTTGAAATATgtaagttaa--aaccatctcaagttttattaact-ggactgcatccttggcaaaatgtgtatcttaaattgcatggtggatttcctttttccgtcttgttactag---------------------------------------
||||| |||   || |||||    || || |||||||| ||||| |||||||| ||||||||||||||||||||| | || | |||||||  |  || | | ||   | || | || |  || |  |  |      |||  || |  |   |||| |   |  | | |  | | |      | |  ||                                        
GCAACGATAGTAGTGGGAGGCCAGTTTCTCAATGCAATCACAATAGAGCATTTTATCTTGAGACTGCCTTATCACCTCAAGTTTgtaagtgcattaatcttgtcctttcttttaaatttagagtttagacaaaaataaagttgaagttcttattgtactttatactgcaatatcctaataagatgttaaaattaatcccttaattttcatgttggcttcatgcaacag

upper sequence: Vv00s0804g00020.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT4G37080.2 (Arabidopsis thaliana), 5'ss of exon 9
GCAACAATAAATGTTGGAGGATGCTTGCTGAATGCAATTACAATTGAGCATTTCATCTTGAGACTGCCTTATCACTTGAAATATgtaagttaaaaccatctcaagttttattaactggactgcatccttgg--caaaatgtgtatcttaaattgcatggtggatttcctttttccgtcttgttactag-
|||||||||| ||| ||||||  || ||| |||||||| ||||| || ||||||||||||||||| || || ||||||||||  ||||||         ||  | || | | ||||| | | || | |||   |||| | ||  |||||   | |||  |   | ||   ||    | |||  |  |  
GCAACAATAATTGTGGGAGGACACTCGCTAAATGCAATCACAATCGAACATTTCATCTTGAGACTTCCATACCACTTGAAATTCgtaagt-------gccttcatttctttgaactgta-tacaccattgaatcaaagtttggttctta---tacatttttc-tctctgcttcttattttgaaaaaaag