Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAGCTGGAGTTTGGGGACTTCTAGCTCTTCACCTGGCTGATGATCCTATTTTACCTTTCAACTATGTCTTACACAGAACAATTATGGgtaggcatctgttatctttcatttatcattgcttattttctcagtcattaaactagattttttgaattgagattttatactctggtaactgcaacttaac...

Basic information

species Vitis vinifera
transcript Vv00s0352g00020.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0352g00020.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA03G36430.1 (Glycine max), 5'ss of exon 7
TAGCTGGAGTTTGGGGACTTCTAGCTCTTCACCTGGCTGATGATCCTATTTTACCTTTCAACTATGTCTTACA--CAGAACAATTATGGgtaggcatctgt---tatctttcatttatcattgcttattttctcagtcat-taaactagattttttgaattgagattttatactctggtaactgcaacttaac
|  | ||||||||||| ||||||||||||||| ||||||||||||| ||| | |||||||| || || | | |  || |  | ||   |||  |||| | |    | || | ||||| | |    || ||  |   | || |    | |  |    |    |   |   ||| ||| |  ||| | | ||   
TTACAGGAGTTTGGGGGCTTCTAGCTCTTCACTTGGCTGATGATCCCATTCTTCCTTTCAATTACGTTTCATATGCAAATGAGTTGCAGgtgcgcatttatattcacctctgattta-cgtaaactacttgttagttgatgtcttttgggatgccagctgcgctgtcaaataatctagggacttctattt---

upper sequence: Vv00s0352g00020.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA19G39080.1 (Glycine max), 5'ss of exon 7
TAGCTGGAGTTTGGGGACTTCTAGCTCTTCACCTGGCTGATGATCCTATTTTACCTTTCAACTATGTCT--TACACAGAACAATTATGGgtaggcatctgttatctttcatttatcattgcttattttctcagtcattaaactagattttttgaattgagattttatactctggtaactgcaacttaac
|  ||||||||||||| ||||| || |||||| |||||||||||||  || | |||||||| || ||    ||  || |  | |||  |||  |||| | |     ||||  | | |||   ||   |  ||   |||||| |||                                            
TTACTGGAGTTTGGGGGCTTCTGGCCCTTCACTTGGCTGATGATCCCGTTCTTCCTTTCAATTACGTTCCATATGCAAATGAGTTACAGgtgtgcatttata----ttcacctctgatt---taaactaacaaa-attaaattag--------------------------------------------